Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LPP_RS08885 Genome accession   NC_006368
Coordinates   1988642..1989136 (-) Length   164 a.a.
NCBI ID   WP_011214062.1    Uniprot ID   -
Organism   Legionella pneumophila str. Paris     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1983642..1994136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPP_RS08870 (lpp1764) recX 1985619..1986071 (-) 453 WP_010947526.1 recombination regulator RecX -
  LPP_RS08875 (lpp1765) recA 1986064..1987110 (-) 1047 WP_010947527.1 recombinase RecA Machinery gene
  LPP_RS08880 (lpp1766) - 1987413..1988348 (-) 936 WP_011214061.1 lpg1803 family Dot/Icm T4SS effector -
  LPP_RS08885 (lpp1767) cinA 1988642..1989136 (-) 495 WP_011214062.1 CinA family protein Machinery gene
  LPP_RS08890 - 1989213..1989410 (-) 198 WP_011215777.1 hypothetical protein -
  LPP_RS08895 (lpp1768) mutS 1989757..1992297 (+) 2541 WP_011214063.1 DNA mismatch repair protein MutS -
  LPP_RS08900 (lpp1769) - 1992310..1993998 (+) 1689 WP_011214064.1 autotransporter assembly complex protein TamA -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17528.06 Da        Isoelectric Point: 6.7364

>NTDB_id=24151 LPP_RS08885 WP_011214062.1 1988642..1989136(-) (cinA) [Legionella pneumophila str. Paris]
MSHFSILVEEIAAYLKKAKWQLVTAESCTGGLIAACLTEIPGSSNWFERGFVTYSNLAKEEMLSVAHELIQTHGAVSEEV
ALAMAAGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVHHQFQQTSRQQFTGSRQEIRLSACQYALNGVLSTLK
KVCG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=24151 LPP_RS08885 WP_011214062.1 1988642..1989136(-) (cinA) [Legionella pneumophila str. Paris]
ATGAGTCATTTCTCGATACTGGTTGAAGAAATAGCTGCCTATTTAAAAAAGGCCAAATGGCAATTAGTGACTGCGGAATC
TTGTACTGGTGGTTTAATTGCTGCTTGCCTTACGGAAATACCTGGAAGCTCAAATTGGTTTGAGCGTGGTTTTGTTACTT
ATAGTAATTTAGCTAAAGAGGAAATGCTTTCTGTTGCTCACGAGCTAATACAAACTCATGGGGCAGTCAGTGAAGAAGTG
GCTTTGGCTATGGCTGCTGGTGCGTTACAACATAGTATGGGTAATATCGCTGTATCAGTTACTGGTATCGCAGGTCCAGA
AGGAGGCAGTATTGAAAAACCAGTAGGTACTGTATGCTTTGCCTGGGCAGTTCACCATCAATTTCAACAAACATCAAGAC
AACAATTCACTGGAAGTCGGCAAGAAATACGTTTGTCTGCCTGTCAATATGCTTTAAATGGAGTTCTTTCTACTCTTAAA
AAAGTCTGTGGCTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae D39

38.217

95.732

0.366
  cinA Streptococcus pneumoniae R36A

38.217

95.732

0.366
  cinA Streptococcus pneumoniae Rx1

38.217

95.732

0.366
  cinA Streptococcus pneumoniae R6

38.217

95.732

0.366

Multiple sequence alignment