Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYC_RS03540 Genome accession   NC_006576
Coordinates   765572..765934 (-) Length   120 a.a.
NCBI ID   WP_011242996.1    Uniprot ID   Q31PY3
Organism   Synechococcus elongatus PCC 6301     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 760572..770934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS03530 (syc0682_c) - 760754..764974 (-) 4221 WP_011242994.1 GAF domain-containing protein -
  SYC_RS03535 (syc0683_c) - 765046..765474 (-) 429 WP_231621329.1 chemotaxis protein CheW -
  SYC_RS03540 (syc0684_c) pilH 765572..765934 (-) 363 WP_011242996.1 response regulator transcription factor Machinery gene
  SYC_RS03545 (syc0685_c) - 765979..767211 (-) 1233 WP_234701795.1 response regulator -
  SYC_RS03550 - 767949..768149 (+) 201 WP_041676942.1 hypothetical protein -
  SYC_RS03555 (syc0686_c) - 768238..770634 (-) 2397 WP_011242998.1 GH116 family glycosyl hydrolase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13303.36 Da        Isoelectric Point: 4.6952

>NTDB_id=24146 SYC_RS03540 WP_011242996.1 765572..765934(-) (pilH) [Synechococcus elongatus PCC 6301]
MSTVLVVEDTASEMELITTYLRNSGYTVIGAADAKEALNKVSQFKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVIKPFQQEDLVKAVRSVDF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=24146 SYC_RS03540 WP_011242996.1 765572..765934(-) (pilH) [Synechococcus elongatus PCC 6301]
ATGAGTACAGTACTTGTTGTAGAAGACACCGCTTCTGAAATGGAGCTAATCACCACCTACTTGCGAAATAGCGGTTACAC
AGTCATCGGGGCTGCTGATGCCAAAGAAGCACTGAACAAGGTGAGCCAGTTTAAGCCTGATGTTGTTGTGACTGATGTGG
TCATGCCTGGCATGAGTGGCTTTGAATTGTGCCGGAGCCTCAAGAAAAATCCCGAGACAGAAAAGCTACCTGTCATTGTC
TGCAGTTCCAAAAATCAAGAGATTGATCGCCTCTGGGCGATGAAACAGGGGGCTGATGCTTACGTCATTAAGCCTTTCCA
ACAGGAAGATTTAGTAAAGGCTGTTCGCTCAGTTGACTTCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31PY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50

98.333

0.492
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367

Multiple sequence alignment