Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CHN56_RS15610 Genome accession   NZ_CP022654
Coordinates   3114616..3115260 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SCDB 291     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3109616..3120260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS15580 (CHN56_03083) - 3110059..3110400 (-) 342 WP_014418765.1 hypothetical protein -
  CHN56_RS15590 (CHN56_03084) degQ 3110865..3111005 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  CHN56_RS15595 (CHN56_03085) - 3111157..3112068 (+) 912 WP_031378407.1 polyprenyl synthetase family protein -
  CHN56_RS15600 (CHN56_03086) comX 3112068..3112232 (+) 165 WP_007613432.1 competence pheromone ComX -
  CHN56_RS15605 (CHN56_03087) comP 3112244..3114535 (+) 2292 WP_094247540.1 histidine kinase Regulator
  CHN56_RS15610 (CHN56_03088) comA 3114616..3115260 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  CHN56_RS15615 (CHN56_03089) - 3115282..3115665 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  CHN56_RS15620 (CHN56_03090) mnhG 3115705..3116079 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  CHN56_RS15625 (CHN56_03091) - 3116063..3116347 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  CHN56_RS15630 (CHN56_03092) - 3116347..3116823 (-) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  CHN56_RS15635 (CHN56_03093) - 3116829..3118310 (-) 1482 WP_094247541.1 Na+/H+ antiporter subunit D -
  CHN56_RS15640 (CHN56_03094) - 3118303..3118644 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  CHN56_RS15645 (CHN56_03095) - 3118644..3119075 (-) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=241330 CHN56_RS15610 WP_003152052.1 3114616..3115260(+) (comA) [Bacillus velezensis strain SCDB 291]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=241330 CHN56_RS15610 WP_003152052.1 3114616..3115260(+) (comA) [Bacillus velezensis strain SCDB 291]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCACGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment