Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CHN56_RS13610 Genome accession   NZ_CP022654
Coordinates   2729071..2729760 (+) Length   229 a.a.
NCBI ID   WP_202980098.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2724071..2734760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS13585 (CHN56_02692) degS 2724355..2725518 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  CHN56_RS13590 (CHN56_02693) degU 2725595..2726284 (+) 690 WP_094247453.1 two-component system response regulator DegU Regulator
  CHN56_RS13595 (CHN56_02694) - 2726382..2727230 (+) 849 WP_003151387.1 DegV family protein -
  CHN56_RS13600 (CHN56_02695) comFA 2727338..2728723 (+) 1386 WP_094247454.1 DEAD/DEAH box helicase Machinery gene
  CHN56_RS13605 (CHN56_02696) - 2728781..2729065 (+) 285 WP_017418816.1 competence protein ComFB -
  CHN56_RS13610 (CHN56_02697) comFC 2729071..2729760 (+) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  CHN56_RS13615 (CHN56_02698) - 2729834..2730253 (+) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  CHN56_RS13620 (CHN56_02699) flgM 2730323..2730589 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CHN56_RS13625 (CHN56_02700) - 2730604..2731086 (+) 483 WP_003151394.1 flagellar protein FlgN -
  CHN56_RS13630 (CHN56_02701) flgK 2731102..2732619 (+) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  CHN56_RS13635 (CHN56_02702) flgL 2732631..2733548 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  CHN56_RS13640 (CHN56_02703) - 2733639..2734208 (+) 570 WP_003151397.1 DUF6470 family protein -
  CHN56_RS13645 (CHN56_02704) fliW 2734238..2734669 (+) 432 WP_060657507.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25273.98 Da        Isoelectric Point: 8.4880

>NTDB_id=241325 CHN56_RS13610 WP_202980098.1 2729071..2729760(+) (comFC) [Bacillus velezensis strain SCDB 291]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=241325 CHN56_RS13610 WP_202980098.1 2729071..2729760(+) (comFC) [Bacillus velezensis strain SCDB 291]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment