Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CHN56_RS13590 Genome accession   NZ_CP022654
Coordinates   2725595..2726284 (+) Length   229 a.a.
NCBI ID   WP_094247453.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2720595..2731284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS13570 (CHN56_02689) - 2721139..2722215 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  CHN56_RS13575 (CHN56_02690) - 2722305..2723480 (-) 1176 WP_071392366.1 LCP family protein -
  CHN56_RS13580 (CHN56_02691) - 2723485..2724132 (-) 648 WP_060657503.1 YigZ family protein -
  CHN56_RS13585 (CHN56_02692) degS 2724355..2725518 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  CHN56_RS13590 (CHN56_02693) degU 2725595..2726284 (+) 690 WP_094247453.1 two-component system response regulator DegU Regulator
  CHN56_RS13595 (CHN56_02694) - 2726382..2727230 (+) 849 WP_003151387.1 DegV family protein -
  CHN56_RS13600 (CHN56_02695) comFA 2727338..2728723 (+) 1386 WP_094247454.1 DEAD/DEAH box helicase Machinery gene
  CHN56_RS13605 (CHN56_02696) - 2728781..2729065 (+) 285 WP_017418816.1 competence protein ComFB -
  CHN56_RS13610 (CHN56_02697) comFC 2729071..2729760 (+) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  CHN56_RS13615 (CHN56_02698) - 2729834..2730253 (+) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  CHN56_RS13620 (CHN56_02699) flgM 2730323..2730589 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CHN56_RS13625 (CHN56_02700) - 2730604..2731086 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25924.61 Da        Isoelectric Point: 5.7490

>NTDB_id=241323 CHN56_RS13590 WP_094247453.1 2725595..2726284(+) (degU) [Bacillus velezensis strain SCDB 291]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGDSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=241323 CHN56_RS13590 WP_094247453.1 2725595..2726284(+) (degU) [Bacillus velezensis strain SCDB 291]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGATTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment