Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CHN56_RS03570 Genome accession   NZ_CP022654
Coordinates   811637..811921 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCDB 291     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 806637..816921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN56_RS03550 (CHN56_00710) ade 806743..808476 (-) 1734 WP_094246976.1 adenine deaminase -
  CHN56_RS03555 (CHN56_00711) ktrC 808625..809290 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CHN56_RS03560 (CHN56_00712) - 809331..810158 (-) 828 WP_077722153.1 gamma-glutamylcyclotransferase family protein -
  CHN56_RS03565 (CHN56_00713) - 810160..811464 (-) 1305 WP_014304932.1 ATP-binding protein -
  CHN56_RS03570 (CHN56_00714) abrB 811637..811921 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CHN56_RS03580 (CHN56_00715) mreBH 812191..813198 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  CHN56_RS03585 (CHN56_00716) - 813270..813404 (+) 135 WP_003154559.1 protein YkpC -
  CHN56_RS03590 (CHN56_00717) - 813505..814737 (+) 1233 WP_070081754.1 aminopeptidase -
  CHN56_RS03595 (CHN56_00718) - 814768..815676 (-) 909 WP_094246977.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=241284 CHN56_RS03570 WP_024085249.1 811637..811921(-) (abrB) [Bacillus velezensis strain SCDB 291]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=241284 CHN56_RS03570 WP_024085249.1 811637..811921(-) (abrB) [Bacillus velezensis strain SCDB 291]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment