Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   BaGK_RS19580 Genome accession   NZ_CP022653
Coordinates   3953733..3953852 (+) Length   39 a.a.
NCBI ID   WP_010332289.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3948733..3958852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS19560 (BaGK_19560) - 3948781..3950157 (-) 1377 WP_094232933.1 YncE family protein -
  BaGK_RS19565 (BaGK_19565) - 3950197..3951558 (-) 1362 WP_094232934.1 YncE family protein -
  BaGK_RS19570 (BaGK_19570) - 3951840..3952394 (+) 555 WP_094232935.1 YdhK family protein -
  BaGK_RS19575 (BaGK_19575) rapF 3952607..3953749 (+) 1143 WP_094232936.1 tetratricopeptide repeat protein Regulator
  BaGK_RS19580 (BaGK_19580) phrF 3953733..3953852 (+) 120 WP_010332289.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BaGK_RS19585 (BaGK_19585) - 3954107..3954586 (+) 480 WP_094232937.1 hypothetical protein -
  BaGK_RS19590 (BaGK_19590) - 3954736..3955524 (+) 789 WP_088118184.1 hypothetical protein -
  BaGK_RS19595 (BaGK_19595) - 3955547..3956185 (+) 639 WP_010790248.1 hypothetical protein -
  BaGK_RS19600 (BaGK_19600) - 3956201..3956992 (+) 792 WP_240515914.1 hypothetical protein -
  BaGK_RS19605 (BaGK_19605) - 3956995..3957642 (+) 648 WP_094232939.1 ABC transporter ATP-binding protein -
  BaGK_RS19610 (BaGK_19610) - 3957635..3958192 (+) 558 WP_094232940.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4160.08 Da        Isoelectric Point: 10.4997

>NTDB_id=241275 BaGK_RS19580 WP_010332289.1 3953733..3953852(+) (phrF) [Bacillus atrophaeus strain GQJK17]
MKLKSKILLSCLALSTVFVATSIATAPAHQMEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=241275 BaGK_RS19580 WP_010332289.1 3953733..3953852(+) (phrF) [Bacillus atrophaeus strain GQJK17]
ATGAAATTGAAGTCTAAAATATTACTCTCTTGTCTGGCCCTAAGCACAGTGTTTGTCGCAACGAGTATTGCAACTGCACC
TGCACATCAAATGGAAGTTGCTCAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

85.185

69.231

0.59
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment