Detailed information NTG0241274

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BaGK_RS19575
• Genome accession: NZ_CP022653
• Coordinates: 3952607..3953749 (+)
• Length: 380 a.a.
• NCBI ID: WP_094232936.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain GQJK17
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3947607..3958749

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BaGK_RS19555 (BaGK_19555)	-	3948073..3948774 (+)	702	WP_094232932.1	bacteriocin biosynthesis protein AlbG	-
BaGK_RS19560 (BaGK_19560)	-	3948781..3950157 (-)	1377	WP_094232933.1	YncE family protein	-
BaGK_RS19565 (BaGK_19565)	-	3950197..3951558 (-)	1362	WP_094232934.1	YncE family protein	-
BaGK_RS19570 (BaGK_19570)	-	3951840..3952394 (+)	555	WP_094232935.1	YdhK family protein	-
BaGK_RS19575 (BaGK_19575)	rapF	3952607..3953749 (+)	1143	WP_094232936.1	tetratricopeptide repeat protein	Regulator
BaGK_RS19580 (BaGK_19580)	phrF	3953733..3953852 (+)	120	WP_010332289.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BaGK_RS19585 (BaGK_19585)	-	3954107..3954586 (+)	480	WP_094232937.1	hypothetical protein	-
BaGK_RS19590 (BaGK_19590)	-	3954736..3955524 (+)	789	WP_088118184.1	hypothetical protein	-
BaGK_RS19595 (BaGK_19595)	-	3955547..3956185 (+)	639	WP_010790248.1	hypothetical protein	-
BaGK_RS19600 (BaGK_19600)	-	3956201..3956992 (+)	792	WP_240515914.1	hypothetical protein	-
BaGK_RS19605 (BaGK_19605)	-	3956995..3957642 (+)	648	WP_094232939.1	ABC transporter ATP-binding protein	-
BaGK_RS19610 (BaGK_19610)	-	3957635..3958192 (+)	558	WP_094232940.1	hypothetical protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 45637.18 Da
• Isoelectric Point: 5.0709

>NTDB_id=241274 BaGK_RS19575 WP_094232936.1 3952607..3953749(+) (rapF) [Bacillus atrophaeus strain GQJK17]
MTGVISSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQIEEDQDIYLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL
SDLLLEIDKKQARLTGVLDYYFNLFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM
DYARQAYEIYKEHTAYNIRLLQCHSLFATNFLDFKQYEDAISHFKKAYTMAESEEQPQLMGRTLYNIGLCKNSQDQYESA
ITYFKRAISVFEEANILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGIAYSKEAGDIIYLSEFEFLKSLYLSGPDEEAIQ
KFFDFLESKMMYADLEDFALDVAKYYYGRENFQKASAYFLKVERVRQLIQGGVKLYEIEV

Nucleotide

• Length: 1143 bp

>NTDB_id=241274 BaGK_RS19575 WP_094232936.1 3952607..3953749(+) (rapF) [Bacillus atrophaeus strain GQJK17]
GTGACAGGCGTCATATCTTCTTCCATTGGAGAAAAGATTAATGAATGGTACATGTACATACGCCGATTCAGCATACCGGA
TGCGGAATATTTACGAAGAGAAATCAAACAAGAGCTGGATCAAATAGAAGAAGACCAGGATATTTATTTGTATTATTCAC
TGATGGAATTCCGGCACAATCTGATGCTTGAGTATCTAGAACCGTTAGAAAAAATGCGGATAGAGGAACAGCCGCGACTG
TCCGATTTGCTGCTTGAAATCGATAAAAAACAGGCTCGTTTAACCGGAGTCCTTGATTATTACTTTAATCTCTTCAGGGG
CATGTACGAACTGGATCAGCGGGAGTACTTGTCTGCTATTAAATTTTTCAAAAAAGCCGAAAGCAAGCTGATTTTTGTAA
AGGATCGAATAGAAAAAGCTGAGTTTTTCTTTAAAATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCCATG
GACTATGCACGGCAGGCATATGAAATATACAAAGAGCACACGGCATATAATATTAGATTGCTTCAATGCCATTCTTTGTT
TGCTACCAATTTCTTAGATTTCAAGCAATATGAGGACGCCATATCACATTTCAAAAAAGCTTATACAATGGCAGAATCCG
AAGAACAGCCCCAATTAATGGGAAGAACGCTGTATAACATTGGGCTTTGCAAAAACAGCCAAGACCAGTATGAGTCAGCA
ATCACATATTTCAAAAGAGCCATATCTGTTTTTGAAGAAGCTAATATTCTTCCTTCTCTGCCTCAAGCTTATTTTTTGAT
TACACAAATTCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAAGGAATTGCTTATTCTAAAGAGG
CCGGAGATATCATTTACTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCTGGTCCGGATGAAGAGGCAATTCAG
AAATTCTTCGATTTTCTCGAAAGTAAAATGATGTATGCTGATCTTGAAGATTTTGCGCTTGATGTGGCAAAATATTATTA
TGGACGTGAAAATTTCCAAAAAGCTTCCGCGTATTTTCTGAAGGTGGAACGAGTAAGGCAGCTTATTCAAGGAGGAGTGA
AGTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (222-289)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-64)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	91.864	100	0.921
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	100	0.574