Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BaGK_RS18535 Genome accession   NZ_CP022653
Coordinates   3740424..3741113 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain GQJK17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3735424..3746113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS18500 (BaGK_18500) - 3735603..3736085 (-) 483 WP_061570804.1 flagellar protein FlgN -
  BaGK_RS18505 (BaGK_18505) flgM 3736101..3736361 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  BaGK_RS18510 (BaGK_18510) - 3736441..3736860 (-) 420 WP_063638074.1 TIGR03826 family flagellar region protein -
  BaGK_RS18515 (BaGK_18515) comFC 3736932..3737654 (-) 723 WP_149917147.1 double zinc ribbon domain-containing protein Machinery gene
  BaGK_RS18520 (BaGK_18520) - 3737618..3737914 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  BaGK_RS18525 (BaGK_18525) comFA 3737971..3739368 (-) 1398 WP_094232855.1 ATP-dependent helicase ComFA Machinery gene
  BaGK_RS18530 (BaGK_18530) - 3739475..3740317 (-) 843 WP_003326716.1 DegV family protein -
  BaGK_RS18535 (BaGK_18535) degU 3740424..3741113 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BaGK_RS18540 (BaGK_18540) degS 3741190..3742353 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  BaGK_RS18545 (BaGK_18545) - 3742571..3743224 (+) 654 WP_003326713.1 YigZ family protein -
  BaGK_RS18550 (BaGK_18550) - 3743224..3744447 (+) 1224 WP_088118072.1 LCP family protein -
  BaGK_RS18555 (BaGK_18555) - 3744538..3745614 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=241269 BaGK_RS18535 WP_003219701.1 3740424..3741113(-) (degU) [Bacillus atrophaeus strain GQJK17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=241269 BaGK_RS18535 WP_003219701.1 3740424..3741113(-) (degU) [Bacillus atrophaeus strain GQJK17]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment