Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BaGK_RS18515 Genome accession   NZ_CP022653
Coordinates   3736932..3737654 (-) Length   240 a.a.
NCBI ID   WP_149917147.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3731932..3742654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS18480 (BaGK_18480) fliW 3732075..3732506 (-) 432 WP_061570800.1 flagellar assembly protein FliW -
  BaGK_RS18485 (BaGK_18485) - 3732541..3733107 (-) 567 WP_003326726.1 DUF6470 family protein -
  BaGK_RS18490 (BaGK_18490) flgL 3733155..3734051 (-) 897 WP_063638070.1 flagellar hook-associated protein FlgL -
  BaGK_RS18495 (BaGK_18495) flgK 3734063..3735586 (-) 1524 WP_088118068.1 flagellar hook-associated protein FlgK -
  BaGK_RS18500 (BaGK_18500) - 3735603..3736085 (-) 483 WP_061570804.1 flagellar protein FlgN -
  BaGK_RS18505 (BaGK_18505) flgM 3736101..3736361 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  BaGK_RS18510 (BaGK_18510) - 3736441..3736860 (-) 420 WP_063638074.1 TIGR03826 family flagellar region protein -
  BaGK_RS18515 (BaGK_18515) comFC 3736932..3737654 (-) 723 WP_149917147.1 double zinc ribbon domain-containing protein Machinery gene
  BaGK_RS18520 (BaGK_18520) - 3737618..3737914 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  BaGK_RS18525 (BaGK_18525) comFA 3737971..3739368 (-) 1398 WP_094232855.1 ATP-dependent helicase ComFA Machinery gene
  BaGK_RS18530 (BaGK_18530) - 3739475..3740317 (-) 843 WP_003326716.1 DegV family protein -
  BaGK_RS18535 (BaGK_18535) degU 3740424..3741113 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BaGK_RS18540 (BaGK_18540) degS 3741190..3742353 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27580.78 Da        Isoelectric Point: 8.5583

>NTDB_id=241267 BaGK_RS18515 WP_149917147.1 3736932..3737654(-) (comFC) [Bacillus atrophaeus strain GQJK17]
MCDEKKRGAKKLNCLLCDSQFSQSLTWRSLFLLEPDEKVCHPCKRQLQRITGTVCPSCGRPQNTNEKCPDCTEWESRIDR
GFLLSRNRSVYLYNEMMKESLARFKFRGDAELLHVFKTDFVSEFSTVYPEKSYVLIPIPLSEERKAERGFNQSELLAKCL
GRPIIHSLTRLDNEKQSKKNKAERLLFKRVFDTEINSVGDMDVILIDDLYTTGATLHHAARCLLEKGKAGSVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=241267 BaGK_RS18515 WP_149917147.1 3736932..3737654(-) (comFC) [Bacillus atrophaeus strain GQJK17]
TTGTGTGACGAAAAAAAGAGAGGAGCAAAAAAGCTGAACTGCTTATTGTGTGATTCGCAGTTTTCTCAATCTCTTACGTG
GAGATCTTTATTTTTATTAGAGCCGGACGAAAAGGTCTGTCATCCGTGCAAAAGACAATTACAAAGGATCACAGGAACGG
TTTGCCCTTCATGCGGCAGACCTCAAAACACAAATGAAAAATGCCCCGATTGCACCGAATGGGAATCAAGGATTGATAGA
GGCTTCCTTTTAAGCCGAAACCGTTCTGTTTATTTATATAATGAGATGATGAAAGAATCGCTGGCCCGTTTTAAATTCAG
AGGAGACGCAGAGCTTTTGCATGTTTTTAAGACTGATTTTGTATCGGAATTTTCAACTGTCTATCCTGAAAAAAGCTATG
TGCTCATTCCAATCCCGCTGAGTGAGGAACGGAAAGCAGAGCGCGGGTTTAACCAGTCAGAGCTTCTGGCGAAATGTTTA
GGCCGGCCCATCATTCATTCCCTAACCCGTTTGGATAATGAAAAACAATCCAAGAAAAACAAAGCGGAACGGCTCCTTTT
CAAACGTGTTTTTGATACTGAAATCAATTCCGTTGGAGATATGGATGTCATATTAATCGATGATCTTTATACCACTGGCG
CTACCTTACACCATGCAGCCCGCTGTTTATTGGAAAAAGGAAAAGCAGGCTCTGTGTCCTCTTTTACTTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

66.25

100

0.663

Multiple sequence alignment