Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BaGK_RS13715 Genome accession   NZ_CP022653
Coordinates   2806627..2807256 (-) Length   209 a.a.
NCBI ID   WP_094232443.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2801627..2812256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS13690 (BaGK_13690) rpsT 2801920..2802186 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  BaGK_RS13695 (BaGK_13695) holA 2802201..2803244 (-) 1044 WP_094232441.1 DNA polymerase III subunit delta -
  BaGK_RS21885 - 2803284..2803433 (-) 150 WP_010789254.1 hypothetical protein -
  BaGK_RS13700 (BaGK_13700) - 2803474..2803608 (+) 135 WP_003229983.1 YqzM family protein -
  BaGK_RS13705 (BaGK_13705) comEC 2803650..2805983 (-) 2334 WP_094232442.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BaGK_RS13710 (BaGK_13710) - 2805990..2806559 (-) 570 WP_003325392.1 ComE operon protein 2 -
  BaGK_RS13715 (BaGK_13715) comEA 2806627..2807256 (-) 630 WP_094232443.1 helix-hairpin-helix domain-containing protein Machinery gene
  BaGK_RS13720 (BaGK_13720) comER 2807340..2808161 (+) 822 WP_003325389.1 late competence protein ComER -
  BaGK_RS13725 (BaGK_13725) - 2808231..2808971 (-) 741 WP_094232444.1 class I SAM-dependent DNA methyltransferase -
  BaGK_RS13730 (BaGK_13730) rsfS 2808968..2809324 (-) 357 WP_094232445.1 ribosome silencing factor -
  BaGK_RS13735 (BaGK_13735) yqeK 2809341..2809901 (-) 561 WP_094232446.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BaGK_RS13740 (BaGK_13740) - 2809891..2810460 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  BaGK_RS13745 (BaGK_13745) yhbY 2810472..2810762 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -
  BaGK_RS13750 (BaGK_13750) aroE 2810756..2811598 (-) 843 WP_094232447.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22210.13 Da        Isoelectric Point: 4.6181

>NTDB_id=241251 BaGK_RS13715 WP_094232443.1 2806627..2807256(-) (comEA) [Bacillus atrophaeus strain GQJK17]
MNWFYQHKKIILTAGAAVIFIFIVLLLIFPGAKKQEPVQQITASPDTAGTQVQQQESKGDADGEKIIIDIKGAVKHPGVY
ELKTGDRVSQAIEKAGGINSEADEKQVNLAELLQDGTVVYIPSEGEESLQSAAATASVQNGAGKEALVNINTASLEELQA
ISGVGPSKAEAIIAYREENGKFQAVEDITNVSGIGEKSFEKIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=241251 BaGK_RS13715 WP_094232443.1 2806627..2807256(-) (comEA) [Bacillus atrophaeus strain GQJK17]
ATGAATTGGTTTTACCAGCACAAAAAAATAATCTTAACGGCAGGTGCTGCTGTCATCTTCATCTTCATCGTCCTCCTGCT
TATTTTTCCCGGTGCAAAGAAGCAGGAGCCTGTTCAGCAAATCACAGCGTCGCCTGACACGGCGGGCACACAAGTTCAGC
AGCAAGAATCAAAAGGTGATGCTGACGGAGAAAAAATTATCATTGATATTAAAGGCGCTGTCAAACATCCGGGTGTTTAC
GAATTGAAAACGGGAGACAGAGTTTCACAGGCTATCGAAAAAGCGGGAGGCATTAATTCGGAGGCTGATGAAAAACAAGT
AAATTTAGCTGAACTCCTGCAGGACGGCACTGTCGTGTACATTCCGAGTGAGGGGGAAGAGTCGTTACAAAGCGCTGCCG
CAACTGCTTCTGTGCAAAACGGAGCAGGAAAAGAGGCTTTGGTTAATATCAATACAGCGTCATTAGAGGAACTGCAGGCT
ATTTCCGGGGTCGGTCCGTCAAAAGCAGAAGCTATAATAGCTTATCGTGAAGAAAACGGAAAATTTCAAGCCGTTGAAGA
CATTACAAATGTCTCGGGAATCGGCGAAAAATCATTTGAGAAAATAAAATCAGCCATCACAGTTAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(68-122)

Helix-hairpin-helix motif (HHH_3)

(145-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

65.55

100

0.656

Multiple sequence alignment