Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BaGK_RS13030 Genome accession   NZ_CP022653
Coordinates   2686893..2688623 (-) Length   576 a.a.
NCBI ID   WP_010789175.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2681893..2693623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS13010 (BaGK_13010) - 2682030..2683148 (+) 1119 WP_088117553.1 NADH-dependent flavin oxidoreductase -
  BaGK_RS13015 (BaGK_13015) - 2683313..2684170 (+) 858 WP_003325485.1 manganese catalase family protein -
  BaGK_RS13020 (BaGK_13020) spo0A 2684338..2685135 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  BaGK_RS13025 (BaGK_13025) spoIVB 2685418..2686698 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  BaGK_RS13030 (BaGK_13030) recN 2686893..2688623 (-) 1731 WP_010789175.1 DNA repair protein RecN Machinery gene
  BaGK_RS13035 (BaGK_13035) argR 2688658..2689107 (-) 450 WP_003325480.1 arginine repressor ArgR -
  BaGK_RS13040 (BaGK_13040) - 2689206..2690051 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -
  BaGK_RS13045 (BaGK_13045) dxs 2690048..2691949 (-) 1902 WP_003325478.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BaGK_RS13050 (BaGK_13050) - 2692156..2693046 (-) 891 WP_094232404.1 polyprenyl synthetase family protein -
  BaGK_RS13055 (BaGK_13055) - 2693036..2693290 (-) 255 WP_094232405.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64463.21 Da        Isoelectric Point: 4.7139

>NTDB_id=241238 BaGK_RS13030 WP_010789175.1 2686893..2688623(-) (recN) [Bacillus atrophaeus strain GQJK17]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSSGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDMVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=241238 BaGK_RS13030 WP_010789175.1 2686893..2688623(-) (recN) [Bacillus atrophaeus strain GQJK17]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAGCGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGTTGTTGGACAAGTTTGCCGGAGAAGAAGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGTTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCACCGGCTGGATTTGATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGCAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCTGACATCAATGAACCGCTGCAAAAACT
TTCAGAAAGTGTCTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACTGTA
GAAGACATTTTGGAATATGCTTCAAAAATTGAAGAAGAAATTGACCAAATCCAAAATAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATGGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAGCCGCTTTCTAAAGTAGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCCAAAGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCAGAAATCGGCCGGATGATTGCCGGAGTCGAAGTGACCGATCTGACCAAACGG
CATGCGAAGGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.278

100

0.903

Multiple sequence alignment