Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BaGK_RS13020 Genome accession   NZ_CP022653
Coordinates   2684338..2685135 (-) Length   265 a.a.
NCBI ID   WP_010789174.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2679338..2690135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS12995 (BaGK_12995) - 2679771..2680514 (-) 744 WP_003325489.1 glycerophosphodiester phosphodiesterase -
  BaGK_RS13000 (BaGK_13000) - 2680626..2681249 (-) 624 WP_010789171.1 N-acetylmuramoyl-L-alanine amidase family protein -
  BaGK_RS13005 (BaGK_13005) - 2681272..2681574 (-) 303 WP_003325487.1 hypothetical protein -
  BaGK_RS13010 (BaGK_13010) - 2682030..2683148 (+) 1119 WP_088117553.1 NADH-dependent flavin oxidoreductase -
  BaGK_RS13015 (BaGK_13015) - 2683313..2684170 (+) 858 WP_003325485.1 manganese catalase family protein -
  BaGK_RS13020 (BaGK_13020) spo0A 2684338..2685135 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  BaGK_RS13025 (BaGK_13025) spoIVB 2685418..2686698 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  BaGK_RS13030 (BaGK_13030) recN 2686893..2688623 (-) 1731 WP_010789175.1 DNA repair protein RecN Machinery gene
  BaGK_RS13035 (BaGK_13035) argR 2688658..2689107 (-) 450 WP_003325480.1 arginine repressor ArgR -
  BaGK_RS13040 (BaGK_13040) - 2689206..2690051 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29524.93 Da        Isoelectric Point: 6.4134

>NTDB_id=241237 BaGK_RS13020 WP_010789174.1 2684338..2685135(-) (spo0A) [Bacillus atrophaeus strain GQJK17]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLSKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNSSSVTHRAPSSHGSIIRNHEPKRKNLDASITSIIH
EIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSM
TKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=241237 BaGK_RS13020 WP_010789174.1 2684338..2685135(-) (spo0A) [Bacillus atrophaeus strain GQJK17]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGTCAGGA
AGATATGGAAGTCATCGGCGTGGCTTATAATGGCCAGGAATGTCTGTCTTTATTTAAAGAAAAAGATCCTGATGTTCTTG
TCTTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTATTGGAACGGCTCAGGGAGTCAGATCTTTCAAAGCAGCCG
AATGTGATCATGCTGACAGCGTTCGGACAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCTTATTTTATCCT
AAAGCCGTTTGATATGGAAAACCTTGTCGGGCATATCCGCCAAGTCAGCGGAAATTCGAGCAGTGTGACACATCGCGCGC
CTTCATCACATGGCAGCATCATTAGAAATCATGAGCCGAAACGGAAAAATCTCGACGCCAGTATAACAAGCATCATTCAC
GAAATCGGCGTCCCGGCGCATATCAAAGGATATCTCTACCTGCGCGAAGCCATCTCAATGGTCTACAACGATATCGAATT
GCTCGGCAGCATCACGAAAGTGCTCTATCCCGATATCGCCAAAAAATTCAACACCACTGCAAGCCGTGTAGAAAGAGCGA
TCCGCCATGCGATTGAAGTGGCATGGAGCAGAGGGAATATCGATTCGATTTCTTCATTGTTTGGGTACACAGTGAGCATG
ACGAAGGCAAAACCTACAAACTCAGAATTCATTGCGATGGTGGCTGATAAGCTGAGACTTGAGCATAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(155-258)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.974

Multiple sequence alignment