Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   OTERR_RS15235 Genome accession   NZ_CP022579
Coordinates   3363552..3363914 (+) Length   120 a.a.
NCBI ID   WP_187775359.1    Uniprot ID   -
Organism   Oryzomicrobium terrae strain TPP412     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3358552..3368914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTERR_RS15210 (OTERR_29740) - 3359022..3359735 (+) 714 WP_149426285.1 ABC transporter ATP-binding protein -
  OTERR_RS15215 (OTERR_29750) hemL 3359993..3361288 (-) 1296 WP_054621889.1 glutamate-1-semialdehyde 2,1-aminomutase -
  OTERR_RS15220 (OTERR_29760) thiE 3361315..3361995 (-) 681 WP_149426286.1 thiamine phosphate synthase -
  OTERR_RS15225 (OTERR_29770) - 3362033..3363064 (-) 1032 WP_149426287.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  OTERR_RS15230 (OTERR_29780) - 3363263..3363415 (+) 153 WP_223116072.1 rubredoxin -
  OTERR_RS15235 (OTERR_29790) pilG 3363552..3363914 (+) 363 WP_187775359.1 response regulator Regulator
  OTERR_RS15240 (OTERR_29800) - 3364000..3364362 (+) 363 WP_054621884.1 response regulator -
  OTERR_RS15245 (OTERR_29810) - 3364428..3364940 (+) 513 WP_054621883.1 chemotaxis protein CheW -
  OTERR_RS15250 (OTERR_29820) - 3365065..3367272 (+) 2208 WP_149426288.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13316.35 Da        Isoelectric Point: 7.2144

>NTDB_id=240957 OTERR_RS15235 WP_187775359.1 3363552..3363914(+) (pilG) [Oryzomicrobium terrae strain TPP412]
MVIDDSNTIRRSAEIFLTQAGCQVLLAEDGFDALAKIADHQPDLIFCDIMMPRLDGYQTCALIKKNPKFSATPVIMLSSK
DGLFDRARGRMVGSDHYLTKPFTKDTLLQAVTDHRGRNAA

Nucleotide


Download         Length: 363 bp        

>NTDB_id=240957 OTERR_RS15235 WP_187775359.1 3363552..3363914(+) (pilG) [Oryzomicrobium terrae strain TPP412]
ATGGTGATCGACGACTCCAACACCATCCGCCGCAGCGCCGAGATATTCCTCACCCAGGCCGGCTGTCAGGTGTTGCTCGC
CGAAGACGGCTTCGACGCCCTGGCCAAGATCGCCGATCACCAGCCGGACCTGATCTTCTGCGACATCATGATGCCGCGGC
TGGATGGCTATCAGACCTGCGCCCTGATCAAGAAGAACCCCAAGTTCTCTGCAACCCCGGTGATCATGCTGTCCTCCAAG
GACGGCCTGTTCGACCGGGCCCGGGGGCGTATGGTCGGCTCGGATCACTACCTGACCAAGCCGTTCACCAAGGACACCCT
GCTTCAGGCGGTCACCGACCACCGCGGCCGCAACGCCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.544

95

0.642
  vicR Streptococcus mutans UA159

39.316

97.5

0.383
  pilH Synechocystis sp. PCC 6803

41.441

92.5

0.383

Multiple sequence alignment