Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CHR53_RS27895 Genome accession   NZ_CP022572
Coordinates   5818997..5819515 (-) Length   172 a.a.
NCBI ID   WP_066389898.1    Uniprot ID   A0A3Q9QXU7
Organism   Neobacillus mesonae strain H20-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5813997..5824515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR53_RS27870 (CHR53_28035) - 5815064..5816008 (-) 945 WP_066389893.1 YybS family protein -
  CHR53_RS27875 (CHR53_28040) - 5816115..5817050 (-) 936 WP_127489590.1 helix-turn-helix transcriptional regulator -
  CHR53_RS27880 (CHR53_28045) modA 5817193..5817999 (+) 807 WP_066389895.1 molybdate ABC transporter substrate-binding protein -
  CHR53_RS27885 (CHR53_28050) modB 5818005..5818661 (+) 657 WP_066389896.1 molybdate ABC transporter permease subunit -
  CHR53_RS27890 (CHR53_28055) rpsR 5818708..5818947 (-) 240 WP_066389897.1 30S ribosomal protein S18 -
  CHR53_RS27895 (CHR53_28060) ssbA 5818997..5819515 (-) 519 WP_066389898.1 single-stranded DNA-binding protein Machinery gene
  CHR53_RS27900 (CHR53_28065) rpsF 5819583..5819870 (-) 288 WP_066389899.1 30S ribosomal protein S6 -
  CHR53_RS27905 (CHR53_28070) ychF 5820071..5821171 (-) 1101 WP_066389900.1 redox-regulated ATPase YchF -
  CHR53_RS28860 (CHR53_28075) - 5821560..5824205 (+) 2646 WP_244933597.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18797.63 Da        Isoelectric Point: 4.9815

>NTDB_id=240906 CHR53_RS27895 WP_066389898.1 5818997..5819515(-) (ssbA) [Neobacillus mesonae strain H20-5]
MMNRVVLVGRLTKDPELRYTPSGVAVATFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEGQDGRRVYVTEVLAESVQFLEPKNSSGNTGGGGRSNDFYGAPPREPQGSSYGGGNQNQRQNSNQGFTRVDDDPFAGS
GQIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=240906 CHR53_RS27895 WP_066389898.1 5818997..5819515(-) (ssbA) [Neobacillus mesonae strain H20-5]
ATGATGAATCGTGTCGTGCTTGTTGGCCGTTTAACAAAGGATCCTGAATTGCGTTATACACCAAGTGGAGTAGCGGTTGC
TACCTTTACTTTGGCGGTAAATCGTCCGTTTTCCAATCAGCAGGGTGAACGCGAAGCAGACTTTATCAATTGTGTTGTTT
GGCGTAAACCAGCTGAGAATGTCGCTAACTTTTTGAAAAAGGGAAGCATGGCGGGTGTAGATGGTCGTATTCAAACGCGT
AATTACGAAGGTCAAGATGGACGCCGTGTCTATGTGACTGAGGTCTTGGCAGAAAGTGTTCAATTTCTTGAGCCTAAGAA
CTCTTCAGGCAACACTGGCGGCGGCGGAAGAAGCAACGATTTTTACGGTGCTCCTCCAAGAGAGCCTCAAGGTTCTTCAT
ATGGTGGCGGCAATCAGAATCAACGACAAAATTCCAACCAAGGGTTTACAAGAGTGGATGATGATCCATTTGCAGGAAGC
GGACAGATTGACATCTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9QXU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.598

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395

Multiple sequence alignment