Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A17_RS05550 Genome accession   NZ_CP028372
Coordinates   1046562..1047113 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1041562..1052113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS05515 (A17_01116) - 1041751..1042176 (+) 426 WP_002874957.1 GNAT family N-acetyltransferase -
  A17_RS05520 (A17_01117) - 1042241..1042861 (+) 621 WP_052791331.1 NAD(P)H-dependent oxidoreductase -
  A17_RS05525 (A17_01118) - 1042861..1043466 (+) 606 WP_002874954.1 NAD(P)H-dependent oxidoreductase -
  A17_RS05530 (A17_01119) pgsA 1043591..1044127 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A17_RS05535 (A17_01120) rseP 1044124..1045230 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  A17_RS05540 (A17_01121) - 1045223..1046089 (+) 867 WP_002868637.1 VirK family antimicrobial peptide resistance protein -
  A17_RS05545 (A17_01122) rpsF 1046176..1046553 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  A17_RS05550 (A17_01123) ssb 1046562..1047113 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  A17_RS05555 (A17_01124) rpsR 1047124..1047384 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  A17_RS05560 (A17_01125) lon 1047445..1049820 (-) 2376 WP_002868636.1 endopeptidase La -
  A17_RS05565 (A17_01126) - 1049837..1050484 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  A17_RS05570 (A17_01127) fliW 1050645..1051034 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  A17_RS05575 (A17_01128) proC 1051034..1051765 (+) 732 WP_002868635.1 pyrroline-5-carboxylate reductase Machinery gene
  A17_RS05580 (A17_01129) ctsT 1051762..1052064 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=240905 A17_RS05550 WP_002865738.1 1046562..1047113(+) (ssb) [Campylobacter jejuni subsp. jejuni strain huA17]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=240905 A17_RS05550 WP_002865738.1 1046562..1047113(+) (ssb) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361