Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   A17_RS03640 Genome accession   NZ_CP028372
Coordinates   673606..675579 (-) Length   657 a.a.
NCBI ID   WP_002898591.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 668606..680579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS03625 kdpB 669026..671071 (+) 2046 Protein_697 potassium-transporting ATPase subunit KdpB -
  A17_RS03630 (A17_00734) kdpC 671073..671682 (+) 610 Protein_698 potassium-transporting ATPase subunit KdpC -
  A17_RS09850 - 671685..672836 (+) 1152 WP_250533389.1 sensor histidine kinase KdpD -
  A17_RS09855 - 672860..673504 (+) 645 WP_223212446.1 DUF4118 domain-containing protein -
  A17_RS03640 (A17_00738) uvrB 673606..675579 (-) 1974 WP_002898591.1 excinuclease ABC subunit UvrB Machinery gene
  A17_RS03645 (A17_00739) - 675733..675963 (+) 231 WP_002852327.1 hypothetical protein -
  A17_RS03650 (A17_00740) - 675953..676195 (+) 243 WP_002854947.1 hypothetical protein -
  A17_RS03655 (A17_00741) Cj0683 676192..676629 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  A17_RS03660 (A17_00742) priA 676611..678464 (+) 1854 WP_002866530.1 primosomal protein N' -
  A17_RS03665 (A17_00743) cipA 678474..679868 (-) 1395 WP_002874888.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75921.43 Da        Isoelectric Point: 6.6771

>NTDB_id=240899 A17_RS03640 WP_002898591.1 673606..675579(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain huA17]
MLELTSEFKPSPDQQEAINGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=240899 A17_RS03640 WP_002898591.1 673606..675579(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGTTAGAACTTACCAGCGAATTTAAACCTAGTCCTGATCAACAAGAAGCCATAAATGGTATAGTAAAAAGCATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGATAGCTCTACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGATATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGTAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAACATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTAATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGGAATGAACGTGTTTTAGTGACTGTGC
TAACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGACATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTAGATCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGATTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCTAAACTTGTCAAAGAGTTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

UvrB interaction domain (UvrB_inter)

(158-246)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502