Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A17_RS03440 Genome accession   NZ_CP028372
Coordinates   634829..635602 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 629829..640602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS03425 (A17_00686) - 630678..632612 (-) 1935 WP_126655038.1 ribonuclease R family protein -
  A17_RS03430 (A17_00687) ilvC 632731..633753 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  A17_RS03435 (A17_00688) - 633757..634839 (+) 1083 WP_126655039.1 divergent polysaccharide deacetylase family protein -
  A17_RS03440 (A17_00689) dprA 634829..635602 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  A17_RS03445 (A17_00690) dprB 635599..635982 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  A17_RS03450 (A17_00691) - 636011..636850 (+) 840 WP_079460160.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  A17_RS03455 (A17_00692) msrA 637025..637522 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  A17_RS03460 (A17_00693) ppa 637564..638082 (-) 519 WP_002867724.1 inorganic diphosphatase -
  A17_RS03465 (A17_00694) adk 638092..638670 (-) 579 WP_002859580.1 adenylate kinase -
  A17_RS03470 (A17_00695) aspS 638667..640418 (-) 1752 WP_126655040.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=240897 A17_RS03440 WP_002866495.1 634829..635602(+) (dprA) [Campylobacter jejuni subsp. jejuni strain huA17]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=240897 A17_RS03440 WP_002866495.1 634829..635602(+) (dprA) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTGGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459