Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   A17_RS03445 Genome accession   NZ_CP028372
Coordinates   635599..635982 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni strain huA17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 630599..640982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A17_RS03425 (A17_00686) - 630678..632612 (-) 1935 WP_126655038.1 ribonuclease R family protein -
  A17_RS03430 (A17_00687) ilvC 632731..633753 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  A17_RS03435 (A17_00688) - 633757..634839 (+) 1083 WP_126655039.1 divergent polysaccharide deacetylase family protein -
  A17_RS03440 (A17_00689) dprA 634829..635602 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  A17_RS03445 (A17_00690) dprB 635599..635982 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  A17_RS03450 (A17_00691) - 636011..636850 (+) 840 WP_079460160.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  A17_RS03455 (A17_00692) msrA 637025..637522 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  A17_RS03460 (A17_00693) ppa 637564..638082 (-) 519 WP_002867724.1 inorganic diphosphatase -
  A17_RS03465 (A17_00694) adk 638092..638670 (-) 579 WP_002859580.1 adenylate kinase -
  A17_RS03470 (A17_00695) aspS 638667..640418 (-) 1752 WP_126655040.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=240898 A17_RS03445 WP_002852281.1 635599..635982(+) (dprB) [Campylobacter jejuni subsp. jejuni strain huA17]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=240898 A17_RS03445 WP_002852281.1 635599..635982(+) (dprB) [Campylobacter jejuni subsp. jejuni strain huA17]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449