Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CHR53_RS19705 Genome accession   NZ_CP022572
Coordinates   4023988..4024320 (-) Length   110 a.a.
NCBI ID   WP_066385444.1    Uniprot ID   -
Organism   Neobacillus mesonae strain H20-5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4018988..4029320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR53_RS19660 (CHR53_19745) - 4019009..4019644 (+) 636 WP_127489984.1 MBL fold metallo-hydrolase -
  CHR53_RS19665 (CHR53_19750) - 4019796..4020884 (+) 1089 WP_127488058.1 SAM-dependent methyltransferase -
  CHR53_RS19670 (CHR53_19755) - 4020927..4021169 (-) 243 WP_066385429.1 DUF2626 domain-containing protein -
  CHR53_RS19675 (CHR53_19760) - 4021254..4021949 (-) 696 WP_066385431.1 helix-turn-helix domain-containing protein -
  CHR53_RS19680 (CHR53_19765) - 4022168..4022353 (-) 186 WP_127488059.1 YqzE family protein -
  CHR53_RS19685 (CHR53_19770) comGG 4022416..4022799 (-) 384 WP_066385435.1 competence type IV pilus minor pilin ComGG -
  CHR53_RS19690 (CHR53_19775) comGF 4022796..4023275 (-) 480 WP_127489986.1 competence type IV pilus minor pilin ComGF -
  CHR53_RS19695 (CHR53_19780) - 4023226..4023564 (-) 339 WP_066385437.1 hypothetical protein -
  CHR53_RS19700 (CHR53_19785) comGD 4023548..4023988 (-) 441 WP_066385439.1 competence type IV pilus minor pilin ComGD -
  CHR53_RS19705 (CHR53_19790) comGC 4023988..4024320 (-) 333 WP_066385444.1 competence type IV pilus major pilin ComGC Machinery gene
  CHR53_RS19710 (CHR53_19795) comGB 4024341..4025372 (-) 1032 WP_127488060.1 competence type IV pilus assembly protein ComGB -
  CHR53_RS19715 (CHR53_19800) comGA 4025359..4026441 (-) 1083 WP_066385505.1 competence type IV pilus ATPase ComGA Machinery gene
  CHR53_RS19720 (CHR53_19805) - 4026568..4027545 (-) 978 WP_127488061.1 ROK family glucokinase -
  CHR53_RS19725 (CHR53_19810) - 4027552..4027761 (-) 210 WP_066385506.1 YqgQ family protein -
  CHR53_RS19730 (CHR53_19815) - 4027960..4028787 (+) 828 WP_127488062.1 hypothetical protein -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12133.17 Da        Isoelectric Point: 7.8174

>NTDB_id=240884 CHR53_RS19705 WP_066385444.1 4023988..4024320(-) (comGC) [Neobacillus mesonae strain H20-5]
MKKKMVNSEKGFTLIEMMIVMLIISVLLIITIPNVTKHNSNINEKGCQAYVKMVQAEVQAYQVDKNKIPTLTELKSEGYI
KDDKQGCPNGKAVEINASTGEVTVAQSTES

Nucleotide


Download         Length: 333 bp        

>NTDB_id=240884 CHR53_RS19705 WP_066385444.1 4023988..4024320(-) (comGC) [Neobacillus mesonae strain H20-5]
ATGAAGAAAAAAATGGTCAATAGTGAAAAAGGGTTCACGCTGATTGAAATGATGATTGTCATGTTGATCATCTCTGTCCT
GCTGATTATCACAATTCCGAATGTTACTAAACATAATTCTAATATCAATGAAAAAGGATGTCAGGCCTACGTGAAAATGG
TACAAGCAGAAGTACAGGCATATCAGGTAGACAAAAATAAAATTCCAACACTTACGGAGTTGAAAAGTGAAGGGTATATA
AAAGATGATAAACAAGGCTGTCCAAATGGTAAGGCAGTTGAAATCAATGCAAGTACTGGTGAGGTCACAGTCGCCCAATC
GACTGAATCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

54.082

89.091

0.482
  comGC Staphylococcus aureus MW2

41

90.909

0.373
  comGC Staphylococcus aureus N315

41

90.909

0.373

Multiple sequence alignment