Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   C6376_RS19350 Genome accession   NZ_CP028369
Coordinates   4315588..4317732 (+) Length   714 a.a.
NCBI ID   WP_107444574.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4310588..4322732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS19325 (C6376_19315) - 4310974..4311402 (+) 429 WP_107444569.1 VOC family protein -
  C6376_RS19330 (C6376_19320) - 4311393..4312685 (-) 1293 WP_107444570.1 MFS transporter -
  C6376_RS19335 (C6376_19325) - 4312888..4313442 (-) 555 WP_107444571.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C6376_RS19340 (C6376_19330) - 4313492..4314364 (-) 873 WP_107444572.1 glycerophosphodiester phosphodiesterase family protein -
  C6376_RS19345 (C6376_19335) - 4314649..4315515 (+) 867 WP_107444573.1 MHYT domain-containing protein -
  C6376_RS19350 (C6376_19340) uvrB 4315588..4317732 (+) 2145 WP_107444574.1 excinuclease ABC subunit UvrB Machinery gene
  C6376_RS19355 (C6376_19345) - 4317893..4318471 (+) 579 WP_057580284.1 TerD family protein -
  C6376_RS19360 (C6376_19350) - 4318534..4320582 (+) 2049 WP_107444575.1 TerD family protein -
  C6376_RS19365 (C6376_19355) - 4320805..4321806 (+) 1002 WP_107444576.1 TerC family protein -
  C6376_RS19370 (C6376_19360) - 4321936..4322247 (+) 312 WP_107444577.1 hypothetical protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80200.93 Da        Isoelectric Point: 4.8554

>NTDB_id=240860 C6376_RS19350 WP_107444574.1 4315588..4317732(+) (uvrB) [Streptomyces sp. P3]
MRPVSHIERTVAPFEVVSPYQPSGDQPTAIAELAQRVEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEELDRDQLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISEDQQLYIFPATHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGKYELSRGDGVVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRARVEKDERVLVTTLTKKMAEDLTAYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPGMERAIDETNRRREKQVAYNTAHGIDPQPLRKKINDIVAQIAREEVDTEQLLGSGYRAKKDGRATKAPVPSLGD
KAVKGAKSGQARGRAAATVPTDRPAAELAEQIEEMTERMRAAAADLQFEVAARIRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=240860 C6376_RS19350 WP_107444574.1 4315588..4317732(+) (uvrB) [Streptomyces sp. P3]
ATGCGGCCCGTTTCCCACATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GACGGCCATCGCCGAGCTCGCCCAGCGTGTCGAGGCGGGCGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGAA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAGTTCCGTGAACTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCACTGCTCACCCGCCGTGACGTCGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCGCTGCGTGTCGGCGAGGAGCTCGACCGGGACCAGTTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACCTGGCGTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTGCACCCGCTCACCGGC
GAGATCATCAGCGAGGACCAGCAGCTGTACATCTTCCCCGCCACCCACTACGTGGCGGGCCCCGAGCGTCTCGAGCGGGC
CGCGAACGACATCGAGAAGGAGCTCGGCGAGCGCCTGGCCGAGCTGGAGAAACAGGGCAAGCTGCTGGAGGCCCAGCGCC
TGCGCATGCGCACCACGTACGACCTCGAGATGCTCCGCCAGATCGGTTCCTGCTCCGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGTTCCCCGCCGAACACGCTGCTCGACTACTTCCCCGACGACTTCCTGCTCGTCATCGACGA
GTCCCATGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGTAAGCGCACCCTCGTGGACCACGGTT
TCCGGCTGCCCTCGGCTCTCGACAACCGCCCGCTGAAATGGGAGGAGTTCCAGGAACGCATCGGGCAGACCGTGTATCTG
TCGGCGACGCCCGGCAAGTACGAGCTCTCGCGCGGGGACGGCGTCGTGGAGCAGATCATCCGCCCCACCGGCCTCATCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGGGCGCGCGTCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGCCTACTTCCTCGAACTCGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACGCTGCGGCGTATCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTTCGACGTGCT
GGTCGGCATCAACCTCCTGCGGGAGGGACTCGACCTGCCCGAGGTGTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGGACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAACGTCTCCGGTCAGGTCCACATGTAC
GCCGACAAGATCACTCCGGGCATGGAACGGGCGATCGACGAGACCAACCGGCGCCGGGAGAAGCAGGTCGCCTACAACAC
GGCCCACGGCATCGACCCGCAACCGCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCTCCGGCTACCGGGCGAAGAAGGACGGCCGGGCCACCAAGGCGCCGGTGCCGTCCCTCGGCGAC
AAGGCGGTCAAGGGCGCGAAGTCCGGGCAGGCCAGGGGCAGGGCCGCGGCGACGGTGCCGACCGACCGTCCGGCGGCCGA
ACTCGCCGAGCAGATCGAGGAGATGACCGAGCGCATGCGGGCCGCCGCGGCGGACCTGCAGTTCGAGGTGGCCGCCCGGA
TCCGTGACGAGGTCTCCGAGATGAAGAAGGAATTGCGCCAGATGAAAGAGGCGGGTCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(443-551)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB interaction domain (UvrB_inter)

(169-257)

UvrB/uvrC motif (UVR)

(670-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

58.037

98.459

0.571
  uvrB Streptococcus pneumoniae TIGR4

58.037

98.459

0.571
  uvrB Streptococcus pneumoniae D39

58.037

98.459

0.571