NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	BLI_RS14350	Genome accession	NC_006322
Coordinates	2791156..2791761 (-)	Length	201 a.a.
NCBI ID	WP_003183986.1	Uniprot ID	Q65GP5
Organism	Bacillus licheniformis DSM 13 = ATCC 14580
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2786156..2796761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLI_RS14320 (BLi02895)	-	2786816..2787199 (+)	384	WP_003183976.1	TIGR04086 family membrane protein	-
BLI_RS14325 (BLi02896)	yajC	2787396..2787659 (-)	264	WP_085959518.1	preprotein translocase subunit YajC	-
BLI_RS14330 (BLi02897)	tgt	2787706..2788851 (-)	1146	WP_011198160.1	tRNA guanosine(34) transglycosylase Tgt	-
BLI_RS14335 (BLi02898)	queA	2788880..2789908 (-)	1029	WP_003183982.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
BLI_RS14340 (BLi02899)	-	2789949..2790149 (-)	201	WP_003183984.1	DUF2905 domain-containing protein	-
BLI_RS14345 (BLi02900)	ruvB	2790142..2791146 (-)	1005	WP_003183985.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
BLI_RS14350 (BLi02901)	ruvA	2791156..2791761 (-)	606	WP_003183986.1	Holliday junction branch migration protein RuvA	Machinery gene
BLI_RS14355 (BLi02902)	-	2791884..2792405 (-)	522	WP_003183987.1	intercompartmental signaling factor BofC	-
BLI_RS14360 (BLi02903)	-	2792648..2793298 (+)	651	WP_003183988.1	protein kinase family protein	-
BLI_RS14365 (BLi02904)	-	2793576..2793755 (-)	180	WP_003183990.1	small acid-soluble spore protein H	-
BLI_RS14370 (BLi02905)	-	2793851..2794315 (-)	465	WP_003183991.1	DinB family protein	-
BLI_RS14375 (BLi02906)	-	2794376..2795086 (-)	711	WP_003183992.1	poly-gamma-glutamate hydrolase family protein	-
BLI_RS14380 (BLi02907)	-	2795500..2795679 (+)	180	WP_003183993.1	hypothetical protein	-
BLI_RS14385 (BLi02908)	-	2795771..2796097 (-)	327	WP_003183994.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22508.86 Da Isoelectric Point: 5.7383

                                >NTDB_id=24081 BLI_RS14350 WP_003183986.1 2791156..2791761(-) (ruvA) [Bacillus licheniformis DSM 13 = ATCC 14580]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKKNSKETIYTYHYVREDTNALYGFSTREEKMLFTKMLNVTGIGP

KGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADAVPEIAADLFNHEEREQIHEAATALEEAL

EALRALGYSDREIKKVQPHLKKEEALSTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=24081 BLI_RS14350 WP_003183986.1 2791156..2791761(-) (ruvA) [Bacillus licheniformis DSM 13 = ATCC 14580]

TTGATCGAATTCGTAAAAGGGACGATTGATTATGTATCGCCCCAATATATTGTCATTGAAAACGGCGGGATCGGCTATCA

GATCTTCACGCCAAATCCGTTTATTTATAAGAAAAACAGCAAAGAAACAATCTATACATACCATTATGTAAGAGAAGACA

CGAATGCGCTGTACGGCTTTTCGACAAGGGAAGAAAAAATGCTGTTTACGAAAATGCTGAATGTTACGGGGATCGGCCCA

AAAGGAGCGCTTGCGATCCTCGCTTCCGGCGATCCGGGAGCGGTGATTGAAGCGATCGAGAATGAGGACGAAGCATTTCT

CGTCAAATTTCCCGGCGTAGGCAAAAAAACGGCAAGGCAGATCATCCTTGACCTGAAAGGGAAGCTTGCGGATGCCGTTC

CTGAAATCGCTGCCGATCTGTTTAACCATGAAGAGCGGGAGCAAATTCATGAAGCGGCAACGGCTCTTGAGGAAGCGCTT

GAAGCATTGAGGGCGCTCGGCTATTCCGATCGGGAAATTAAAAAAGTCCAGCCTCATTTGAAAAAGGAAGAGGCGCTTTC

GACAGATCAATACGTTAAAAAAGCATTGCAAAAATTGTTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q65GP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	83.582	100	0.836
ruvA	Streptococcus pneumoniae R6	40.291	100	0.413
ruvA	Streptococcus pneumoniae D39	40.291	100	0.413
ruvA	Streptococcus pneumoniae TIGR4	40.291	100	0.413

Detailed information NTG0024081