Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CHN49_RS20420 Genome accession   NZ_CP022561
Coordinates   4372155..4374371 (-) Length   738 a.a.
NCBI ID   WP_121783866.1    Uniprot ID   -
Organism   Pseudomonas putida strain B4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4367155..4379371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN49_RS20385 (CHN49_20070) murB 4367461..4368480 (-) 1020 WP_121783865.1 UDP-N-acetylmuramate dehydrogenase -
  CHN49_RS20390 (CHN49_20075) - 4368477..4368941 (-) 465 WP_047604514.1 low molecular weight protein-tyrosine-phosphatase -
  CHN49_RS20395 (CHN49_20080) kdsB 4368941..4369705 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CHN49_RS20400 (CHN49_20085) - 4369702..4369887 (-) 186 WP_003247142.1 Trm112 family protein -
  CHN49_RS20405 (CHN49_20090) lpxK 4369932..4370933 (-) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  CHN49_RS20410 (CHN49_20095) - 4370933..4371367 (-) 435 WP_003247134.1 biopolymer transporter ExbD -
  CHN49_RS20415 (CHN49_20100) exbB 4371364..4371999 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CHN49_RS20420 (CHN49_20105) comA 4372155..4374371 (-) 2217 WP_121783866.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CHN49_RS20425 (CHN49_20110) - 4374514..4375146 (+) 633 WP_012053304.1 DUF2062 domain-containing protein -
  CHN49_RS20430 (CHN49_20115) - 4375030..4375809 (-) 780 WP_003247128.1 ABC transporter permease -
  CHN49_RS20435 (CHN49_20120) - 4375806..4376738 (-) 933 WP_088513094.1 ABC transporter ATP-binding protein -
  CHN49_RS20440 (CHN49_20125) - 4376872..4377495 (-) 624 WP_020192795.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79687.59 Da        Isoelectric Point: 10.2959

>NTDB_id=240800 CHN49_RS20420 WP_121783866.1 4372155..4374371(-) (comA) [Pseudomonas putida strain B4]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAFGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMLEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLVGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLVALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLTNLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALSWWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPFGQIEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAE
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEVAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=240800 CHN49_RS20420 WP_121783866.1 4372155..4374371(-) (comA) [Pseudomonas putida strain B4]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTATGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTTTCGGCAGCCTGTTTACCCGCGTATGGCCGTTGGGTTGGTTTTTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGCTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCTTGGTGCTTGGCGACGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGGCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGTGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGTGGGTGGCGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGGTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCTGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGGGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGACCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCATTGGCGTTG
TTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAACAGCGCCCGGCATGGGTGCCGCCGGCCCTGTCGTGGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGCTTTTGCTGCCTCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTACCCAGGGAGCCGGTGCCGTTTGGCCAAATCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGAG
GCCATTGCGCGTGGTTTGCCGATCAAGCGAATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGCCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGTTGCTGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCACGTGCAGGTGGTCG
AACGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGAGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.975

97.696

0.566
  comA Ralstonia pseudosolanacearum GMI1000

35.547

100

0.37

Multiple sequence alignment