Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CHN49_RS20415 Genome accession   NZ_CP022561
Coordinates   4371364..4371999 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain B4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4366364..4376999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN49_RS20385 (CHN49_20070) murB 4367461..4368480 (-) 1020 WP_121783865.1 UDP-N-acetylmuramate dehydrogenase -
  CHN49_RS20390 (CHN49_20075) - 4368477..4368941 (-) 465 WP_047604514.1 low molecular weight protein-tyrosine-phosphatase -
  CHN49_RS20395 (CHN49_20080) kdsB 4368941..4369705 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CHN49_RS20400 (CHN49_20085) - 4369702..4369887 (-) 186 WP_003247142.1 Trm112 family protein -
  CHN49_RS20405 (CHN49_20090) lpxK 4369932..4370933 (-) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  CHN49_RS20410 (CHN49_20095) - 4370933..4371367 (-) 435 WP_003247134.1 biopolymer transporter ExbD -
  CHN49_RS20415 (CHN49_20100) exbB 4371364..4371999 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CHN49_RS20420 (CHN49_20105) comA 4372155..4374371 (-) 2217 WP_121783866.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CHN49_RS20425 (CHN49_20110) - 4374514..4375146 (+) 633 WP_012053304.1 DUF2062 domain-containing protein -
  CHN49_RS20430 (CHN49_20115) - 4375030..4375809 (-) 780 WP_003247128.1 ABC transporter permease -
  CHN49_RS20435 (CHN49_20120) - 4375806..4376738 (-) 933 WP_088513094.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=240799 CHN49_RS20415 WP_003247132.1 4371364..4371999(-) (exbB) [Pseudomonas putida strain B4]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=240799 CHN49_RS20415 WP_003247132.1 4371364..4371999(-) (exbB) [Pseudomonas putida strain B4]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCACTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment