Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C7Y67_RS13335 Genome accession   NZ_CP028342
Coordinates   2679616..2680344 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus isolate R13     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2674616..2685344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS13320 (C7Y67_13315) clpC 2675051..2677624 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  C7Y67_RS13325 (C7Y67_13320) pgeF 2677772..2678500 (-) 729 WP_057619181.1 peptidoglycan editing factor PgeF -
  C7Y67_RS13330 (C7Y67_13325) rluD 2678502..2679479 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7Y67_RS13335 (C7Y67_13330) comL 2679616..2680344 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  C7Y67_RS13340 (C7Y67_13335) - 2680479..2681960 (+) 1482 WP_025547674.1 lytic transglycosylase F -
  C7Y67_RS13345 (C7Y67_13340) raiA 2682291..2682617 (+) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  C7Y67_RS13350 (C7Y67_13345) pheA 2682861..2684039 (+) 1179 WP_005468591.1 prephenate dehydratase -
  C7Y67_RS13355 (C7Y67_13350) yjjX 2684064..2684597 (+) 534 WP_021451172.1 inosine/xanthosine triphosphatase -
  C7Y67_RS13360 (C7Y67_13355) trpR 2684646..2684957 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=240792 C7Y67_RS13335 WP_005460312.1 2679616..2680344(+) (comL) [Vibrio parahaemolyticus isolate R13]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=240792 C7Y67_RS13335 WP_005460312.1 2679616..2680344(+) (comL) [Vibrio parahaemolyticus isolate R13]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCAGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405