Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CHR26_RS00250 Genome accession   NZ_CP022560
Coordinates   42669..44882 (-) Length   737 a.a.
NCBI ID   WP_145913212.1    Uniprot ID   -
Organism   Pseudomonas putida strain B1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 37669..49882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR26_RS00215 (CHR26_00235) murB 37926..38945 (-) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -
  CHR26_RS00220 (CHR26_00240) - 38942..39406 (-) 465 WP_023048424.1 low molecular weight protein-tyrosine-phosphatase -
  CHR26_RS00225 (CHR26_00245) kdsB 39406..40170 (-) 765 WP_023048425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CHR26_RS00230 (CHR26_00250) - 40167..40352 (-) 186 WP_003247142.1 Trm112 family protein -
  CHR26_RS00235 (CHR26_00255) lpxK 40397..41398 (-) 1002 WP_016485477.1 tetraacyldisaccharide 4'-kinase -
  CHR26_RS00240 (CHR26_00260) - 41398..41832 (-) 435 WP_016485476.1 ExbD/TolR family protein -
  CHR26_RS00245 (CHR26_00265) exbB 41829..42464 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CHR26_RS00250 (CHR26_00270) comA 42669..44882 (-) 2214 WP_145913212.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CHR26_RS00255 (CHR26_00275) - 45025..45651 (+) 627 WP_016485473.1 DUF2062 domain-containing protein -
  CHR26_RS00260 (CHR26_00280) - 45535..46314 (-) 780 WP_016485472.1 ABC transporter permease -
  CHR26_RS00265 (CHR26_00285) - 46311..47243 (-) 933 WP_016485471.1 ABC transporter ATP-binding protein -
  CHR26_RS00270 (CHR26_00290) - 47379..48002 (-) 624 WP_023049045.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79409.38 Da        Isoelectric Point: 10.2299

>NTDB_id=240764 CHR26_RS00250 WP_145913212.1 42669..44882(-) (comA) [Pseudomonas putida strain B1]
MRTGMFALALGLLCPGLFPALPSVGWLITLAACAAVSVFTRVWPLGCFVLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVSGGWRDALRQRLLVVQANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPCACALAMAAALVYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAMLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLIYCFSGRLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAHQRPAWLAPALPLWAWLLVLLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTRHYNLLYDAGPARGETDLGERVVLPTLSKLGVGSLDLMVISHAHADHAGGAA
AIQRGLPVRRLIGGEALDDVPLQPCASGEQWNWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEMPRIDWLQAPHHGSRSSSTEAFIRASAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRHG
EVEGIRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=240764 CHR26_RS00250 WP_145913212.1 42669..44882(-) (comA) [Pseudomonas putida strain B1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCCGGGCCTTTTCCCCGCATTGCCATCGGTCGGATGGTT
GATAACGCTGGCTGCCTGCGCGGCCGTCAGCGTGTTTACCCGCGTTTGGCCATTGGGCTGTTTTGTGCTGGGGCTGTGTT
GGGCGTGCTGGTCTGCCCAGCAGGCCCTTGACGATCGCCTGGCTGCCGGCCTGGACGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCAGCGCGAACTGCGCAGGGGGTGCGCTTCGAGCTGGAGGCGGCACGCTCGCGGCGGGCCGAACT
GCCGCAACGGCTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCACATGGGCCCGACCGGGAGGCGCAACTGCTGGCGCGGCGGGTGGGCGCCACCGGT
ACGGTAAAAGCCGGGCAGCTGCTGGCGCCGGTGAGCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGGTGGTCCA
AGCCAATGGCCGGCAGGCCGCATTGGTGGCACTGGTGCTGGGTGACGGCGCTGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGTACGGTGCACTTGCTGGTTATTTCTGGCCAGCACATCGGCCTCGTGGCCGGTCTGCTGTACGGCCTG
GTGGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCCCGGTTGCCGTGGCTGCCCTGTGCCTGTGCCCTGGCCATGGCGGC
GGCGTTGGTCTACGGCTGGCTGGCCGGTGCGGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCGGTAGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTCGGCGCAATGCTGCCGCTATTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCCTTG
GCGGCGCTGCTGCCTGGGTTCTGGCTGTCGTTTGCCGCAGTGGCCACGCTCATCTACTGCTTCAGCGGCCGTTTGGGCGG
TTGGCGGCCCTGGCAGGCCTGGACGCGCGCGCAATGGGTGATCGCCATCGGCTTGCTGCCGGTGTTGCTGGCCACAGGTT
TACCGGTGAGTCTGAGTGCGCCGCTGGCCAATCTTGTCGCGGTGCCATGGGTTAGCCTGGCGGTGTTGCCGTTGGCGTTG
CTGGGGACGTTGCTGCTGCCGCTGGGTGGGGTAGGGGAAGCGTTGCTGTGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGGCTGTTGGCGTTGGTGGCGCATCAGCGCCCGGCGTGGCTGGCCCCGGCCTTGCCGTTGTGGGCCTGGCTGCTGGTAT
TGCTGGGTGCGCTGCTGGTGCTGCTGCCTCGTGGCGTGCCTTTGCGGGGGTTGGGTGGGGTCATGTTGTTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGCTCGGCCAGGTCGAGGTCTGGCAGCTAGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
TACCCGGCATTACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGGGAGACCGACCTGGGCGAGCGGGTGGTGCTCCCGA
CCTTGAGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGGTCATCAGCCATGCGCATGCCGACCATGCGGGCGGTGCTGCG
GCCATACAGCGTGGGCTGCCGGTCAGGCGGCTGATCGGTGGGGAAGCGCTGGATGATGTGCCGTTGCAGCCTTGTGCCAG
TGGCGAACAATGGAACTGGGATGGCGTGCGCTTTTCGCTATGGCGCTGGGCGGACGGGCAGAGTAGCAATGACCGTTCCT
GTGTCTTGCTGGTAGAGGCGCAGGGTGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCGGCCGAACGGGCCTGGCTG
GCGGACACAGAAATGCCGCGTATCGACTGGTTGCAGGCACCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTAGTGCGCCGCGCGGGGTATTGATTTCGCGAGGGCGTAACAACAGCTTCGGGCACCCGCATGTGCAGGTAATGG
AGCGTTATCAGCGGCATGGTCTGGCGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGTTGGGGCGGCATGGG
GAGGTTGAGGGTATCAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.198

98.1

0.581
  comA Ralstonia pseudosolanacearum GMI1000

34.051

100

0.365

Multiple sequence alignment