Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CHR26_RS00245 Genome accession   NZ_CP022560
Coordinates   41829..42464 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas putida strain B1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 36829..47464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR26_RS00215 (CHR26_00235) murB 37926..38945 (-) 1020 WP_016485479.1 UDP-N-acetylmuramate dehydrogenase -
  CHR26_RS00220 (CHR26_00240) - 38942..39406 (-) 465 WP_023048424.1 low molecular weight protein-tyrosine-phosphatase -
  CHR26_RS00225 (CHR26_00245) kdsB 39406..40170 (-) 765 WP_023048425.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CHR26_RS00230 (CHR26_00250) - 40167..40352 (-) 186 WP_003247142.1 Trm112 family protein -
  CHR26_RS00235 (CHR26_00255) lpxK 40397..41398 (-) 1002 WP_016485477.1 tetraacyldisaccharide 4'-kinase -
  CHR26_RS00240 (CHR26_00260) - 41398..41832 (-) 435 WP_016485476.1 ExbD/TolR family protein -
  CHR26_RS00245 (CHR26_00265) exbB 41829..42464 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CHR26_RS00250 (CHR26_00270) comA 42669..44882 (-) 2214 WP_145913212.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CHR26_RS00255 (CHR26_00275) - 45025..45651 (+) 627 WP_016485473.1 DUF2062 domain-containing protein -
  CHR26_RS00260 (CHR26_00280) - 45535..46314 (-) 780 WP_016485472.1 ABC transporter permease -
  CHR26_RS00265 (CHR26_00285) - 46311..47243 (-) 933 WP_016485471.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=240763 CHR26_RS00245 WP_016391244.1 41829..42464(-) (exbB) [Pseudomonas putida strain B1]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=240763 CHR26_RS00245 WP_016391244.1 41829..42464(-) (exbB) [Pseudomonas putida strain B1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTCGGTCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGATTCGCCATTGGGCGAAATCCTTGCTGCTGGCCTGGCCAAC
TCGCGTCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAAATGACCGCCAATGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTCATGGTCGGCATCCCGGCAGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment