Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CF389_RS19080 Genome accession   NZ_CP022556
Coordinates   3834362..3835006 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain NJAU-Z9     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3829362..3840006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS19055 - 3829761..3830102 (-) 342 WP_003152040.1 hypothetical protein -
  CF389_RS19060 degQ 3830568..3830708 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  CF389_RS19065 comQ 3830893..3831825 (+) 933 WP_050560672.1 class 1 isoprenoid biosynthesis enzyme Regulator
  CF389_RS19075 comP 3831978..3834281 (+) 2304 WP_003152050.1 histidine kinase Regulator
  CF389_RS19080 comA 3834362..3835006 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  CF389_RS19085 - 3835028..3835411 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  CF389_RS19090 mnhG 3835451..3835825 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  CF389_RS19095 - 3835809..3836093 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  CF389_RS19100 - 3836093..3836569 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  CF389_RS19105 - 3836575..3838056 (-) 1482 WP_094760620.1 Na+/H+ antiporter subunit D -
  CF389_RS19110 - 3838049..3838390 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  CF389_RS19115 - 3838390..3838821 (-) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=240762 CF389_RS19080 WP_003152052.1 3834362..3835006(+) (comA) [Bacillus velezensis strain NJAU-Z9]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=240762 CF389_RS19080 WP_003152052.1 3834362..3835006(+) (comA) [Bacillus velezensis strain NJAU-Z9]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGTCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment