Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C7Y67_RS02905 Genome accession   NZ_CP028342
Coordinates   561773..561982 (+) Length   69 a.a.
NCBI ID   WP_108744768.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate R13     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 556773..566982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS02875 (C7Y67_02875) - 558168..558821 (+) 654 WP_108744764.1 hypothetical protein -
  C7Y67_RS02880 (C7Y67_02880) - 558987..559349 (-) 363 WP_108744765.1 transcriptional regulator -
  C7Y67_RS02890 (C7Y67_02890) - 559549..559758 (-) 210 WP_108744766.1 hypothetical protein -
  C7Y67_RS02895 (C7Y67_02895) - 559819..561126 (-) 1308 WP_254059193.1 HipA domain-containing protein -
  C7Y67_RS02900 (C7Y67_02900) - 561128..561673 (-) 546 WP_108745158.1 hypothetical protein -
  C7Y67_RS02905 (C7Y67_02905) sinR 561773..561982 (+) 210 WP_108744768.1 helix-turn-helix transcriptional regulator Regulator
  C7Y67_RS27020 - 562597..564639 (-) 2043 WP_254059194.1 hypothetical protein -
  C7Y67_RS02915 (C7Y67_02915) - 564822..566096 (+) 1275 WP_108744769.1 phospholipase D-like domain-containing protein -
  C7Y67_RS02920 (C7Y67_02920) - 566204..566554 (+) 351 WP_108744770.1 hypothetical protein -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7888.30 Da        Isoelectric Point: 9.0123

>NTDB_id=240751 C7Y67_RS02905 WP_108744768.1 561773..561982(+) (sinR) [Vibrio parahaemolyticus isolate R13]
MNTKLAEAVGQRIVQMRKSKGLPQEKLALLAEIDRSYMSRIERGKINITLEKLYQIADTLDCDVKELLP

Nucleotide


Download         Length: 210 bp        

>NTDB_id=240751 C7Y67_RS02905 WP_108744768.1 561773..561982(+) (sinR) [Vibrio parahaemolyticus isolate R13]
ATGAACACGAAACTTGCCGAAGCTGTAGGTCAACGTATTGTACAAATGAGAAAATCCAAAGGTTTACCTCAAGAGAAACT
AGCCCTCCTCGCTGAGATAGATAGAAGCTATATGAGCCGAATTGAACGCGGTAAAATCAATATCACGCTTGAAAAGTTGT
ATCAGATTGCAGACACTTTGGACTGTGATGTGAAGGAACTTCTGCCTTAA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(15-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

40

94.203

0.377
  sinR Bacillus subtilis subsp. subtilis str. 168

40.984

88.406

0.362
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

37.313

97.101

0.362