Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CEP77_RS04710 | Genome accession | NZ_CP028325 |
| Coordinates | 973843..974106 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | O25204 |
| Organism | Helicobacter pylori strain FDAARGOS_298 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 968843..979106
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP77_RS04695 (CEP77_04690) | - | 969301..972879 (-) | 3579 | WP_331837386.1 | SNF2-related protein | - |
| CEP77_RS08805 (CEP77_04695) | - | 972916..973595 (-) | 680 | Protein_899 | transporter | - |
| CEP77_RS04705 (CEP77_04700) | - | 973595..973831 (-) | 237 | WP_001168532.1 | hypothetical protein | - |
| CEP77_RS04710 (CEP77_04705) | comB3 | 973843..974106 (-) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| CEP77_RS04715 (CEP77_04710) | comB2 | 974118..974402 (-) | 285 | WP_064432016.1 | TrbC/VirB2 family protein | Machinery gene |
| CEP77_RS04720 (CEP77_04715) | - | 974399..974878 (-) | 480 | WP_108169480.1 | hypothetical protein | - |
| CEP77_RS04725 (CEP77_04720) | - | 974871..975086 (-) | 216 | WP_108169481.1 | hypothetical protein | - |
| CEP77_RS04730 (CEP77_04725) | - | 975089..975877 (-) | 789 | WP_172953003.1 | integrase | - |
| CEP77_RS04735 (CEP77_04730) | - | 975855..976496 (-) | 642 | WP_108169483.1 | restriction endonuclease subunit S | - |
| CEP77_RS04740 (CEP77_04735) | - | 976484..977260 (-) | 777 | WP_108169484.1 | Abi family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=240704 CEP77_RS04710 WP_001177716.1 973843..974106(-) (comB3) [Helicobacter pylori strain FDAARGOS_298]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=240704 CEP77_RS04710 WP_001177716.1 973843..974106(-) (comB3) [Helicobacter pylori strain FDAARGOS_298]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATACTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATACTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |