Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CEP77_RS04410 | Genome accession | NZ_CP028325 |
| Coordinates | 905059..905634 (+) | Length | 191 a.a. |
| NCBI ID | WP_108169446.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain FDAARGOS_298 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 900059..910634
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP77_RS04385 (CEP77_04380) | uvrD | 900750..902795 (+) | 2046 | WP_162296836.1 | DNA helicase UvrD | - |
| CEP77_RS04390 (CEP77_04385) | flgA | 902792..903448 (+) | 657 | WP_108169443.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CEP77_RS04395 (CEP77_04390) | - | 903458..904021 (+) | 564 | WP_000780122.1 | UbiX family flavin prenyltransferase | - |
| CEP77_RS04400 (CEP77_04395) | coaD | 904021..904494 (+) | 474 | WP_108169444.1 | pantetheine-phosphate adenylyltransferase | - |
| CEP77_RS04405 (CEP77_04400) | tmk | 904496..905071 (+) | 576 | WP_108169445.1 | dTMP kinase | - |
| CEP77_RS04410 (CEP77_04405) | comFC | 905059..905634 (+) | 576 | WP_108169446.1 | ComF family protein | Machinery gene |
| CEP77_RS04415 (CEP77_04410) | - | 905667..907706 (+) | 2040 | WP_108169963.1 | N-6 DNA methylase | - |
| CEP77_RS04420 (CEP77_04415) | - | 907703..908896 (+) | 1194 | WP_108169447.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21310.80 Da Isoelectric Point: 8.4503
>NTDB_id=240703 CEP77_RS04410 WP_108169446.1 905059..905634(+) (comFC) [Helicobacter pylori strain FDAARGOS_298]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=240703 CEP77_RS04410 WP_108169446.1 905059..905634(+) (comFC) [Helicobacter pylori strain FDAARGOS_298]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.382 |
100 |
0.974 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |