Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | BSG32_RS16210 | Genome accession | NZ_CP022552 |
| Coordinates | 3209861..3210475 (+) | Length | 204 a.a. |
| NCBI ID | WP_005479697.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain MAVP-R | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3210602..3228248 | 3209861..3210475 | flank | 127 |
Gene organization within MGE regions
Location: 3209861..3228248
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSG32_RS16210 (BSG32_16220) | opaR | 3209861..3210475 (+) | 615 | WP_005479697.1 | transcriptional regulator OpaR | Regulator |
| BSG32_RS16215 (BSG32_16225) | lpdA | 3210602..3212029 (-) | 1428 | WP_005479684.1 | dihydrolipoyl dehydrogenase | - |
| BSG32_RS16220 (BSG32_16230) | aceF | 3212298..3214187 (-) | 1890 | WP_089190213.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
| BSG32_RS16225 (BSG32_16235) | aceE | 3214207..3216870 (-) | 2664 | WP_021450014.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
| BSG32_RS16230 (BSG32_16240) | pdhR | 3216919..3217686 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| BSG32_RS16235 (BSG32_16245) | ampD | 3218092..3218643 (-) | 552 | WP_005462574.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BSG32_RS16240 (BSG32_16250) | nadC | 3218736..3219623 (+) | 888 | WP_021450015.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BSG32_RS16245 (BSG32_16255) | - | 3219887..3220351 (+) | 465 | WP_021450016.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BSG32_RS16250 (BSG32_16260) | pilB | 3220351..3222036 (+) | 1686 | WP_021450017.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BSG32_RS16255 (BSG32_16265) | pilC | 3222060..3223283 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| BSG32_RS16260 (BSG32_16270) | pilD | 3223348..3224217 (+) | 870 | WP_021450018.1 | A24 family peptidase | Machinery gene |
| BSG32_RS16265 (BSG32_16275) | coaE | 3224218..3224832 (+) | 615 | WP_021450019.1 | dephospho-CoA kinase | - |
| BSG32_RS16270 (BSG32_16280) | zapD | 3224860..3225600 (+) | 741 | WP_021450020.1 | cell division protein ZapD | - |
| BSG32_RS16275 (BSG32_16285) | yacG | 3225669..3225863 (+) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| BSG32_RS16280 (BSG32_16290) | rplS | 3226257..3226610 (-) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| BSG32_RS16285 (BSG32_16295) | trmD | 3226652..3227395 (-) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| BSG32_RS16290 (BSG32_16300) | rimM | 3227423..3227971 (-) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| BSG32_RS16295 (BSG32_16305) | rpsP | 3228000..3228248 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23634.94 Da Isoelectric Point: 6.0781
>NTDB_id=240670 BSG32_RS16210 WP_005479697.1 3209861..3210475(+) (opaR) [Vibrio parahaemolyticus strain MAVP-R]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=240670 BSG32_RS16210 WP_005479697.1 3209861..3210475(+) (opaR) [Vibrio parahaemolyticus strain MAVP-R]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAGGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAGGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| hapR | Vibrio cholerae C6706 |
72.222 |
97.059 |
0.701 |
| hapR | Vibrio cholerae strain A1552 |
72.222 |
97.059 |
0.701 |