Detailed information NTG0240673

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BSG32_RS16260
• Genome accession: NZ_CP022552
• Coordinates: 3223348..3224217 (+)
• Length: 289 a.a.
• NCBI ID: WP_021450018.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MAVP-R
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3218348..3229217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSG32_RS16240 (BSG32_16250)	nadC	3218736..3219623 (+)	888	WP_021450015.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BSG32_RS16245 (BSG32_16255)	-	3219887..3220351 (+)	465	WP_021450016.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
BSG32_RS16250 (BSG32_16260)	pilB	3220351..3222036 (+)	1686	WP_021450017.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BSG32_RS16255 (BSG32_16265)	pilC	3222060..3223283 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
BSG32_RS16260 (BSG32_16270)	pilD	3223348..3224217 (+)	870	WP_021450018.1	A24 family peptidase	Machinery gene
BSG32_RS16265 (BSG32_16275)	coaE	3224218..3224832 (+)	615	WP_021450019.1	dephospho-CoA kinase	-
BSG32_RS16270 (BSG32_16280)	zapD	3224860..3225600 (+)	741	WP_021450020.1	cell division protein ZapD	-
BSG32_RS16275 (BSG32_16285)	yacG	3225669..3225863 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
BSG32_RS16280 (BSG32_16290)	rplS	3226257..3226610 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
BSG32_RS16285 (BSG32_16295)	trmD	3226652..3227395 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BSG32_RS16290 (BSG32_16300)	rimM	3227423..3227971 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
BSG32_RS16295 (BSG32_16305)	rpsP	3228000..3228248 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32409.53 Da
• Isoelectric Point: 7.1970

>NTDB_id=240673 BSG32_RS16260 WP_021450018.1 3223348..3224217(+) (pilD) [Vibrio parahaemolyticus strain MAVP-R]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSMPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=240673 BSG32_RS16260 WP_021450018.1 3223348..3224217(+) (pilD) [Vibrio parahaemolyticus strain MAVP-R]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCATGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446