Detailed information NTG0240637

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CHQ57_RS20305
• Genome accession: NZ_CP022550
• Coordinates: 4352345..4353220 (+)
• Length: 291 a.a.
• NCBI ID: WP_099994489.1
• Uniprot ID: -
• Organism: Aeromonas salmonicida strain A527
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4347345..4358220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHQ57_RS20285 (CHQ57_20175)	nadC	4347576..4348433 (+)	858	WP_099994488.1	carboxylating nicotinate-nucleotide diphosphorylase	-
CHQ57_RS20290 (CHQ57_20180)	-	4348768..4349205 (+)	438	WP_099994863.1	pilin	-
CHQ57_RS20295 (CHQ57_20185)	pilB	4349205..4350911 (+)	1707	WP_058394588.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
CHQ57_RS20300 (CHQ57_20190)	pilC	4351040..4352281 (+)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
CHQ57_RS20305 (CHQ57_20195)	pilD	4352345..4353220 (+)	876	WP_099994489.1	prepilin peptidase	Machinery gene
CHQ57_RS20310 (CHQ57_20200)	coaE	4353239..4353853 (+)	615	WP_005314164.1	dephospho-CoA kinase	-
CHQ57_RS20315 (CHQ57_20205)	zapD	4353891..4354613 (+)	723	WP_162626251.1	cell division protein ZapD	-
CHQ57_RS20320 (CHQ57_20210)	yacG	4354623..4354817 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
CHQ57_RS20325 (CHQ57_20215)	mutT	4354895..4355302 (-)	408	WP_099994491.1	8-oxo-dGTP diphosphatase MutT	-
CHQ57_RS20330 (CHQ57_20220)	secA	4355469..4358189 (-)	2721	WP_021140335.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32379.58 Da
• Isoelectric Point: 7.0169

>NTDB_id=240637 CHQ57_RS20305 WP_099994489.1 4352345..4353220(+) (pilD) [Aeromonas salmonicida strain A527]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPVMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVVVATTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTVL

Nucleotide

• Length: 876 bp

>NTDB_id=240637 CHQ57_RS20305 WP_099994489.1 4352345..4353220(+) (pilD) [Aeromonas salmonicida strain A527]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCGTCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC
CCCATAACGGCCCTGGAAAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGAGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCTCTGCTCTCTGTGGTGGTTGCCACGACGCTCACCCCAGGCTGGG
GCACGCTGGCTGCCCTCCTGCTTACATGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTGCTGTGGGGCGGGCTGCTGTTCAACCTGCTTGGCGGATACGTGCCTCTCGGCGATGCGGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGTATGGGCT
ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTGTCCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.458	98.969	0.608
pilD	Vibrio campbellii strain DS40M4	55.208	98.969	0.546
pilD	Acinetobacter baumannii D1279779	54.647	92.44	0.505
pilD	Acinetobacter nosocomialis M2	54.647	92.44	0.505
pilD	Neisseria gonorrhoeae MS11	50.746	92.096	0.467