Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C7X15_RS01940 Genome accession   NZ_CP028320
Coordinates   418189..418821 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli O18:H1 strain CFSAN067215     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 413189..423821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7X15_RS01915 (C7X15_02010) yhfG 413321..413488 (+) 168 WP_000736858.1 YhfG family protein -
  C7X15_RS01920 (C7X15_02015) fic 413478..414080 (+) 603 WP_001280638.1 putative adenosine monophosphate-protein transferase Fic -
  C7X15_RS01925 (C7X15_02020) pabA 414112..414675 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  C7X15_RS01930 (C7X15_02025) argD 414761..415981 (+) 1221 WP_000963800.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  C7X15_RS01935 (C7X15_02030) yhfK 416048..418138 (-) 2091 WP_001304921.1 YccS/YhfK family putative transporter -
  C7X15_RS01940 (C7X15_02035) crp 418189..418821 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  C7X15_RS01945 (C7X15_02045) yhfA 419123..419527 (+) 405 WP_001148908.1 OsmC family protein -
  C7X15_RS01950 (C7X15_02050) prkB 419582..420451 (-) 870 WP_001274684.1 phosphoribulokinase -
  C7X15_RS01955 (C7X15_02055) yheU 420505..420723 (-) 219 WP_000907085.1 YheU family protein -
  C7X15_RS01960 (C7X15_02060) yheT 420717..421739 (-) 1023 WP_000057387.1 hydrolase -
  C7X15_RS01965 (C7X15_02065) yheS 421739..423652 (-) 1914 WP_000634808.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=240604 C7X15_RS01940 WP_000242755.1 418189..418821(-) (crp) [Escherichia coli O18:H1 strain CFSAN067215]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=240604 C7X15_RS01940 WP_000242755.1 418189..418821(-) (crp) [Escherichia coli O18:H1 strain CFSAN067215]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment