Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   CG712_RS09215 Genome accession   NZ_CP022547
Coordinates   1738512..1739513 (+) Length   333 a.a.
NCBI ID   WP_096811925.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1733512..1744513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS09195 (CG712_09260) smpB 1734616..1735080 (+) 465 WP_002950240.1 SsrA-binding protein SmpB -
  CG712_RS09200 (CG712_09265) - 1735234..1736640 (+) 1407 WP_022096975.1 Cof-type HAD-IIB family hydrolase -
  CG712_RS09205 (CG712_09270) - 1736642..1737007 (+) 366 WP_002950243.1 S1 RNA-binding domain-containing protein -
  CG712_RS09210 (CG712_09275) - 1737110..1738195 (-) 1086 WP_011225703.1 M24 family metallopeptidase -
  CG712_RS09215 (CG712_09280) ccpA 1738512..1739513 (+) 1002 WP_096811925.1 catabolite control protein A Regulator
  CG712_RS09225 (CG712_09290) - 1739875..1740639 (+) 765 WP_096811926.1 MmcQ/YjbR family DNA-binding protein -
  CG712_RS09230 (CG712_09295) - 1740654..1741769 (+) 1116 WP_096811927.1 glycerate kinase -
  CG712_RS09235 (CG712_09300) - 1741808..1742263 (-) 456 WP_087009787.1 YueI family protein -
  CG712_RS09240 (CG712_09305) eno 1742471..1743775 (+) 1305 WP_011225708.1 surface-displayed alpha-enolase -
  CG712_RS09245 (CG712_09310) - 1743928..1744112 (-) 185 Protein_1737 hypothetical protein -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36569.48 Da        Isoelectric Point: 5.6477

>NTDB_id=240604 CG712_RS09215 WP_096811925.1 1738512..1739513(+) (ccpA) [Streptococcus thermophilus strain B59671]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTQKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIVNSYFA
TLAKGIDDIATMYKYNIVLASSDDNEDHEVTVIHSLISKQVDGIIFMGHHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDCVTQLAKNNEKVAFVSGPLIDDINGKLRLAGYKSGLEKNNLSYNEGLVFEAKYSYKDGFELAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPVTSYTRPNLSSINHPLYDLGAVSMRMLTKIMHKEELEDKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=240604 CG712_RS09215 WP_096811925.1 1738512..1739513(+) (ccpA) [Streptococcus thermophilus strain B59671]
ATGAATACTGATGAAACAATCACAATTTATGATGTAGCGCGTGAAGCTGGAGTATCGATGGCAACTGTTTCTCGTGTTGT
AAATGGTAACAAAAACGTAAAAGAAAACACCCAAAAAAAAGTGCTCGAAGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCAAGTAAAAAAACAACTACTGTAGGAGTTGTCATTCCAAATATTGTAAATAGCTATTTTGCT
ACTCTAGCTAAAGGTATTGATGACATTGCAACCATGTATAAGTATAATATTGTTCTTGCTTCCAGTGATGATAATGAGGA
TCATGAAGTTACAGTCATTCATTCTCTAATTTCTAAACAAGTTGATGGTATTATTTTTATGGGACACCATCTGACAGAAA
AAATCCGTGCAGAATTCTCTCGTACCCGTACACCGATTGTTCTAGCAGGAACAGTTGATCTCGAACACCAATTACCAAGT
GTTAACATCGACTATAAAGCTGCCGTTGAGGATTGTGTAACGCAACTTGCTAAAAATAATGAAAAGGTTGCCTTTGTATC
AGGACCACTAATTGATGATATTAATGGCAAACTACGTTTGGCTGGGTATAAGTCTGGACTTGAAAAGAATAATTTGAGCT
ACAACGAAGGACTTGTCTTTGAAGCTAAATATAGCTATAAAGACGGCTTTGAGTTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGGGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGCAAATCAGTTCC
AGAAGATTTCGAAATCATCACAAGCAATGATTCACCGGTTACAAGCTACACACGTCCAAACCTTTCTAGTATAAACCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATTATGCATAAGGAAGAACTTGAAGATAAAGACGTT
ATTCTTAATCATGGTCTAACTTTACGCCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

75.976

100

0.76

  ccpA Streptococcus pneumoniae D39

75.075

100

0.751

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

54.683

99.399

0.544


Multiple sequence alignment