Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   CG712_RS03315 Genome accession   NZ_CP022547
Coordinates   642322..644289 (-) Length   655 a.a.
NCBI ID   WP_096811568.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain B59671     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 618672..688767 642322..644289 within 0
IScluster/Tn 641028..648384 642322..644289 within 0


Gene organization within MGE regions


Location: 618672..688767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG712_RS03210 (CG712_03240) liaF 618680..619378 (-) 699 WP_011226289.1 cell wall-active antibiotics response protein LiaF -
  CG712_RS10185 - 619633..619800 (-) 168 WP_232510045.1 ion channel -
  CG712_RS03220 (CG712_03250) stkP/pknB 620437..622308 (-) 1872 WP_096811563.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  CG712_RS03225 (CG712_03255) - 622308..623045 (-) 738 WP_096811564.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  CG712_RS03230 (CG712_03260) rsmB 623089..624411 (-) 1323 WP_096811979.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CG712_RS03235 (CG712_03265) fmt 624401..625336 (-) 936 WP_002946883.1 methionyl-tRNA formyltransferase -
  CG712_RS03240 (CG712_03270) - 625354..627750 (-) 2397 WP_011681408.1 primosomal protein N' -
  CG712_RS03245 (CG712_03275) rpoZ 627892..628206 (-) 315 WP_002951415.1 DNA-directed RNA polymerase subunit omega -
  CG712_RS03250 (CG712_03280) gmk 628228..628857 (-) 630 WP_022096878.1 guanylate kinase -
  CG712_RS03255 (CG712_03285) ftsY 629090..630481 (-) 1392 WP_096811565.1 signal recognition particle-docking protein FtsY -
  CG712_RS03260 (CG712_03290) - 630492..631310 (-) 819 WP_011681411.1 Cof-type HAD-IIB family hydrolase -
  CG712_RS03265 (CG712_03295) - 631303..632097 (-) 795 WP_096811566.1 HAD-IIB family hydrolase -
  CG712_RS03270 (CG712_03300) - 632281..632658 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  CG712_RS03275 (CG712_03305) - 632663..633361 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  CG712_RS03280 (CG712_03310) - 633373..634157 (+) 785 Protein_640 ABC transporter permease -
  CG712_RS03285 (CG712_03315) amiF 634207..635136 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  CG712_RS03290 (CG712_03320) amiE 635129..636214 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  CG712_RS03295 (CG712_03325) amiD 636224..637150 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  CG712_RS03300 (CG712_03330) amiC 637150..638643 (-) 1494 WP_002946410.1 ABC transporter permease Regulator
  CG712_RS03305 (CG712_03335) amiA 638705..640672 (-) 1968 WP_096811567.1 peptide ABC transporter substrate-binding protein Regulator
  CG712_RS03310 (CG712_03340) - 641028..642277 (+) 1250 Protein_646 ISL3 family transposase -
  CG712_RS03315 (CG712_03345) amiA 642322..644289 (-) 1968 WP_096811568.1 peptide ABC transporter substrate-binding protein Regulator
  CG712_RS09745 - 644493..644683 (-) 191 Protein_648 IS3 family transposase -
  CG712_RS10825 - 644677..645087 (-) 411 Protein_649 ATP-binding cassette domain-containing protein -
  CG712_RS03335 (CG712_03365) - 645119..645433 (-) 315 Protein_650 TatD family hydrolase -
  CG712_RS03340 (CG712_03370) - 645782..646987 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  CG712_RS03345 (CG712_03375) - 647033..648384 (-) 1352 Protein_652 IS3 family transposase -
  CG712_RS03350 (CG712_03380) pta 648470..649453 (-) 984 WP_096811570.1 phosphate acetyltransferase -
  CG712_RS03355 (CG712_03385) - 649463..650362 (-) 900 WP_096811571.1 RluA family pseudouridine synthase -
  CG712_RS03360 (CG712_03390) - 650359..651195 (-) 837 WP_096811572.1 NAD kinase -
  CG712_RS03365 (CG712_03395) - 651167..651841 (-) 675 WP_096811573.1 GTP pyrophosphokinase family protein -
  CG712_RS03370 (CG712_03400) - 651937..652512 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  CG712_RS03375 (CG712_03405) - 652877..653848 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  CG712_RS03380 (CG712_03410) - 653852..654964 (+) 1113 WP_002948029.1 cysteine desulfurase family protein -
  CG712_RS03385 (CG712_03415) - 654966..655313 (+) 348 WP_014608555.1 DUF1831 domain-containing protein -
  CG712_RS03390 (CG712_03420) - 655457..656116 (+) 660 WP_041827076.1 redox-sensing transcriptional repressor Rex -
  CG712_RS03395 (CG712_03425) - 656109..656804 (+) 696 WP_096811574.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  CG712_RS03400 (CG712_03430) radC 656857..657543 (-) 687 WP_071417294.1 RadC family protein -
  CG712_RS03405 (CG712_03435) - 657592..659376 (-) 1785 WP_096811575.1 rhamnan synthesis F family protein -
  CG712_RS03410 (CG712_03440) - 659373..660428 (-) 1056 WP_096811576.1 glycosyltransferase family 2 protein -
  CG712_RS03415 (CG712_03445) - 660448..661653 (-) 1206 WP_014727633.1 ABC transporter ATP-binding protein -
  CG712_RS03420 (CG712_03450) - 661653..662462 (-) 810 WP_002948020.1 ABC transporter permease -
  CG712_RS03425 (CG712_03455) - 662446..663402 (-) 957 WP_011226328.1 glycosyltransferase family 2 protein -
  CG712_RS03430 (CG712_03460) cps2T 663399..664547 (-) 1149 WP_096811577.1 beta 1-4 rhamnosyltransferase Cps2T -
  CG712_RS03435 (CG712_03465) - 664656..665666 (-) 1011 WP_011226330.1 glycosyltransferase family 2 protein -
  CG712_RS03440 (CG712_03470) - 665663..666940 (-) 1278 WP_096811578.1 lipopolysaccharide biosynthesis protein -
  CG712_RS03445 (CG712_03475) - 666933..667265 (-) 333 WP_011226332.1 DUF2304 domain-containing protein -
  CG712_RS03450 (CG712_03480) - 667271..667966 (-) 696 WP_171073564.1 glycosyltransferase family 2 protein -
  CG712_RS03455 (CG712_03485) rfbD 668043..668894 (-) 852 WP_014621820.1 dTDP-4-dehydrorhamnose reductase -
  CG712_RS03460 (CG712_03490) - 668971..670305 (-) 1335 WP_002946422.1 DUF6056 family protein -
  CG712_RS03465 (CG712_03495) - 670418..671335 (-) 918 WP_375708554.1 glycosyltransferase family 2 protein -
  CG712_RS03470 (CG712_03500) - 671398..672813 (-) 1416 WP_096811580.1 DUF2142 domain-containing protein -
  CG712_RS03475 (CG712_03505) - 673147..673482 (-) 336 WP_002891474.1 metal-sulfur cluster assembly factor -
  CG712_RS03480 (CG712_03510) rpoD 673536..674645 (-) 1110 WP_011226338.1 RNA polymerase sigma factor RpoD -
  CG712_RS03485 (CG712_03515) dnaG 674649..676460 (-) 1812 WP_011681448.1 DNA primase -
  CG712_RS09885 (CG712_03520) mscL 676604..676684 (+) 81 Protein_681 large conductance mechanosensitive channel protein MscL -
  CG712_RS03495 (CG712_03525) rpsU 676844..677020 (-) 177 WP_011226340.1 30S ribosomal protein S21 -
  CG712_RS03500 (CG712_03530) - 677215..678009 (-) 795 WP_096811581.1 transporter substrate-binding domain-containing protein -
  CG712_RS03505 (CG712_03535) - 678102..679211 (-) 1110 WP_096811582.1 aminotransferase -
  CG712_RS03510 (CG712_03540) - 679558..680355 (-) 798 WP_096811583.1 transporter substrate-binding domain-containing protein -
  CG712_RS03515 (CG712_03545) - 680352..681182 (-) 831 WP_022097022.1 transporter substrate-binding domain-containing protein -
  CG712_RS03520 (CG712_03550) - 681397..681861 (-) 465 WP_011681454.1 8-oxo-dGTP diphosphatase -
  CG712_RS03525 (CG712_03555) uvrB 681906..683897 (-) 1992 WP_002953358.1 excinuclease ABC subunit UvrB -
  CG712_RS03530 (CG712_03560) - 684044..684511 (-) 468 WP_014608580.1 hypothetical protein -
  CG712_RS10705 (CG712_03565) - 684584..685520 (-) 937 Protein_690 CPBP family intramembrane glutamic endopeptidase -
  CG712_RS03540 (CG712_03570) - 685719..687929 (+) 2211 WP_011226350.1 ABC transporter substrate-binding protein/permease -
  CG712_RS03545 (CG712_03575) - 687929..688669 (+) 741 WP_002945131.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 71600.64 Da        Isoelectric Point: 5.1811

>NTDB_id=240562 CG712_RS03315 WP_096811568.1 642322..644289(-) (amiA) [Streptococcus thermophilus strain B59671]
MKKSKWLALAGVALLGVGVLAACSSKSSTSGTTYSNIYGSDPETLDYITSIMGGTKAVLTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADAKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKQEPYWNSKTTYGVLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDSIKFSYSDGSDLESIERSFSDGALSIARVFPTSSNYASVEKKYKDNIFYTEPGASTSVIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPYDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADGQDGLYNAKKAKTEFAKAKEALQGEGVQFPVHLDLPVDQSSKLSVAQAQSLKQTIEKSLGSENVVIDINQMSSDDMQN
ATSNAANAAAEDWDISNGVGWGPDYQDPSTYLDILKTTSSENTKAFNGYDDPNNAAAAQVGLKDYDALLDSAASETTDIN
ARYDRYAQAQAWLEDSSLIIPLTVSNGAAPVISRLTPFTGASIQVGDKGSSYVKYVKSQEKVVTKKEYEQSREKWLKEKK
ASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=240562 CG712_RS03315 WP_096811568.1 642322..644289(-) (amiA) [Streptococcus thermophilus strain B59671]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATAGTAATATTTATGGCTCAGATCCAGAAACCTTGGATTATATTACATCAATTATGGGAG
GGACAAAAGCTGTTTTGACTAATGGTGTAGATGGTCTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTGACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAGCATGCCGCTGATGCCAAATCTGGAGCCCTTT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATCGACGATTACACTCTGCAATACACACTAAAAAAACAGGAACCATACTGGAACTCTAAGACAACCTATGGTGTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTATATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAA
AACGTGCATTTTGACTCTATCAAATTCTCATATTCTGATGGATCGGATCTAGAATCAATAGAACGTAGTTTCTCTGACGG
CGCTCTCAGCATTGCACGTGTCTTCCCTACGAGTTCAAACTATGCATCGGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATCGGTTATTGGTGTAAACATTGACCGCCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTTCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGCGCAGCTCTTGCTCTACGTAACCTTTTTGTTCCTTATGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGTGATCTTGTGACAGAAAAAATGAGCTCTTATGGTGATGAGTGGTCTGGTGTTAACTTT
GCAGATGGTCAAGACGGTCTCTACAATGCTAAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAGGCTCTTCAAGGAGA
AGGGGTACAATTCCCAGTTCACTTAGACCTTCCAGTTGATCAAAGTTCTAAACTTAGTGTTGCTCAAGCTCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAAATGTCATCTGATGATATGCAAAAT
GCGACTAGTAATGCGGCAAATGCTGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGGTTGGGGTCCAGATTATCAAGA
TCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGGCTTTCAATGGTTATGATGATCCAAACA
ATGCAGCAGCAGCCCAAGTAGGTCTTAAGGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACATCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTATCATTCCATTGACTGTTAGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATACAGGTGGGTGATAAGGGCTCATCCTACGTCA
AATATGTGAAATCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAGAAA
GCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

90.091

100

0.902
  amiA3 Streptococcus thermophilus LMD-9

88.128

100

0.884
  amiA3 Streptococcus thermophilus LMG 18311

87.823

100

0.881

Multiple sequence alignment