Detailed information NTG0240363

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CHH28_RS09620
• Genome accession: NZ_CP022530
• Coordinates: 2040307..2041662 (-)
• Length: 451 a.a.
• NCBI ID: WP_094060111.1
• Uniprot ID: A0A222FIR5
• Organism: Bacterioplanes sanyensis strain NV9
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2035307..2046662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHH28_RS09600 (CHH28_09605)	-	2035311..2035790 (-)	480	WP_094060107.1	GspH/FimT family pseudopilin	-
CHH28_RS09605 (CHH28_09610)	-	2035790..2038891 (-)	3102	WP_094060108.1	VWA domain-containing protein	-
CHH28_RS09610 (CHH28_09615)	-	2038916..2039467 (-)	552	WP_094060109.1	pilus assembly PilX family protein	-
CHH28_RS09615 (CHH28_09620)	-	2039578..2040138 (-)	561	WP_094060110.1	GspH/FimT family pseudopilin	-
CHH28_RS09620 (CHH28_09625)	pilR	2040307..2041662 (-)	1356	WP_094060111.1	sigma-54-dependent transcriptional regulator	Regulator
CHH28_RS09625 (CHH28_09630)	-	2041659..2043218 (-)	1560	WP_094060112.1	sensor histidine kinase	-
CHH28_RS09630 (CHH28_09635)	-	2043317..2045008 (+)	1692	WP_094060113.1	NAD+ synthase	-
CHH28_RS20615 (CHH28_09640)	-	2044941..2045204 (-)	264	WP_094062033.1	DUF2798 domain-containing protein	-
CHH28_RS09640 (CHH28_09645)	-	2045308..2046129 (-)	822	WP_094060114.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 50459.51 Da
• Isoelectric Point: 5.2418

>NTDB_id=240363 CHH28_RS09620 WP_094060111.1 2040307..2041662(-) (pilR) [Bacterioplanes sanyensis strain NV9]
MNQYSALIIDDEPDIRELIALTLERMELDCYQAGSVSEAVEALQQRPYHFCITDMKLPDGNGMDIIQLCHSRYPDMPVAM
ITAHGNMELAIDALKAGAFDFVAKPLDTQRLRDLVTAALKLTQVVIHQQTPDDSLLGESQRMADLKASIRKVARTQAPVF
VHGESGTGKELVARLIHHLSPRAQGPFIAVNCGAIPADLMESEFFGHVKGSFTGASHDKPGLFKAADGGTLFLDEVADLP
LEMQAKLLRVIQEKAVRKVGEEHEQPIDVRIVSASHHDLVKRVDENSFRQDLYFRLNVIHLGVPRLAERAEDIPQLAKHF
VTKYAREWGMPNAELSEDAITALSRYHFPGNVRELENILQRAFTMAENDCINTDDLNLPQVAAPQQPVAVDETSENAPIV
TNNLEQYLENIERRAITQALEETRWNKTAAAEKLGISFRALRYRCKKLEID

Nucleotide

• Length: 1356 bp

>NTDB_id=240363 CHH28_RS09620 WP_094060111.1 2040307..2041662(-) (pilR) [Bacterioplanes sanyensis strain NV9]
ATGAACCAATACTCTGCCCTGATCATCGATGACGAACCAGACATTCGTGAGCTGATTGCCCTGACCCTGGAGCGCATGGA
ACTCGATTGTTATCAAGCAGGCAGTGTCAGTGAAGCCGTAGAGGCACTGCAGCAGCGTCCCTACCACTTCTGCATCACTG
ACATGAAGTTGCCTGACGGTAACGGCATGGACATCATTCAGCTGTGCCATTCACGCTACCCTGACATGCCCGTCGCGATG
ATCACCGCTCATGGCAATATGGAACTGGCCATTGATGCACTGAAGGCCGGCGCCTTTGACTTTGTTGCCAAACCCCTTGA
TACACAACGGCTGCGCGACCTAGTGACCGCTGCACTCAAACTGACACAAGTGGTGATCCATCAACAAACGCCTGACGATT
CGCTGCTGGGTGAGTCGCAGCGCATGGCTGACTTGAAAGCGTCTATCCGCAAGGTTGCCCGCACTCAAGCACCGGTGTTT
GTCCATGGCGAATCCGGCACCGGCAAAGAGCTGGTCGCGCGACTGATCCACCACTTGAGTCCAAGAGCGCAAGGCCCGTT
CATTGCTGTCAACTGTGGTGCAATTCCAGCCGATTTGATGGAAAGTGAGTTCTTCGGTCACGTAAAGGGCAGCTTTACCG
GCGCCAGCCATGATAAACCCGGCCTATTTAAGGCTGCTGATGGCGGCACATTGTTCCTGGATGAAGTGGCCGACTTACCG
CTGGAAATGCAGGCCAAATTACTGCGGGTGATCCAAGAAAAAGCCGTGCGTAAAGTCGGCGAAGAACATGAGCAGCCGAT
TGACGTACGCATCGTCAGTGCCAGCCACCATGATCTGGTCAAACGTGTCGATGAAAACAGCTTTCGCCAGGACCTTTACT
TCCGCTTGAACGTTATCCACCTAGGCGTCCCCCGCTTAGCTGAGCGGGCTGAGGACATTCCGCAGCTGGCCAAACACTTT
GTGACCAAATACGCCCGCGAATGGGGCATGCCAAATGCCGAACTGAGTGAGGACGCCATCACTGCGCTATCGCGCTACCA
CTTCCCTGGTAATGTACGGGAGCTGGAGAACATACTGCAGCGCGCCTTCACCATGGCCGAGAATGACTGCATCAACACCG
ACGATCTGAACCTCCCACAAGTAGCCGCACCACAGCAGCCAGTGGCGGTCGATGAAACCAGTGAGAACGCACCGATCGTC
ACCAATAACCTCGAACAGTACCTAGAAAACATAGAACGCCGGGCAATCACTCAGGCGTTGGAAGAAACCCGTTGGAATAA
GACCGCAGCGGCTGAGAAACTGGGGATCAGCTTTCGAGCGCTCAGGTATCGGTGTAAAAAGTTGGAAATTGACTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (408-448)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

3D structure

• AlphaFold DB: A0A222FIR5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	57.65	100	0.577
pilR	Acinetobacter baumannii strain A118	49.455	100	0.503
luxO	Vibrio cholerae strain A1552	38.073	96.674	0.368