Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CHH27_RS05385 Genome accession   NZ_CP022529
Coordinates   1182538..1183095 (+) Length   185 a.a.
NCBI ID   WP_094070673.1    Uniprot ID   A0A222F0E9
Organism   Labrenzia sp. VG12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1177538..1188095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHH27_RS05370 (CHH27_05370) - 1177902..1178051 (-) 150 WP_094070671.1 DUF1127 domain-containing protein -
  CHH27_RS05375 (CHH27_05375) - 1178645..1178794 (-) 150 WP_094070672.1 DUF1127 domain-containing protein -
  CHH27_RS05380 (CHH27_05380) uvrA 1179035..1181965 (-) 2931 WP_198338354.1 excinuclease ABC subunit UvrA -
  CHH27_RS27555 - 1182228..1182515 (+) 288 WP_157738719.1 hypothetical protein -
  CHH27_RS05385 (CHH27_05385) ssb 1182538..1183095 (+) 558 WP_094070673.1 single-stranded DNA-binding protein Machinery gene
  CHH27_RS05390 (CHH27_05390) - 1183144..1183620 (-) 477 WP_094070674.1 hypothetical protein -
  CHH27_RS05395 (CHH27_05395) - 1184111..1186105 (+) 1995 WP_094070675.1 murein L,D-transpeptidase -
  CHH27_RS05400 (CHH27_05400) - 1186168..1187328 (-) 1161 WP_247646195.1 zinc ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18955.57 Da        Isoelectric Point: 5.2955

>NTDB_id=240340 CHH27_RS05385 WP_094070673.1 1182538..1183095(+) (ssb) [Labrenzia sp. VG12]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAESYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSNLTMLDGRGEGAGAGGGLPDYGNDSQGGGGGGFGGGSGGSFGGGGSGGGYG
SGSSGGGYGGPSGGGGGPMDDEIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=240340 CHH27_RS05385 WP_094070673.1 1182538..1183095(+) (ssb) [Labrenzia sp. VG12]
ATGGCGGGCAGCGTCAACAAAGTCATCTTGGTCGGCAATCTTGGGGCCGATCCGGAAATTCGGCGAACCCAGGACGGGCG
ACCGATCGCCAATCTGCGGATCGCTACGTCAGAATCCTGGCGCGACCGGAACAGCGGCGAACGTCGCGAGAAAACGGAGT
GGCACCGTGTGGTGATCTTCAACGAAGGTCTTTGCAAGGTTGCCGAGAGTTACCTGCGCAAGGGATCCAAGGTCTATCTC
GAAGGCCAGTTGCAGACACGCAAATGGCAGGACCAATCCGGTCAGGACAGGTATTCCACGGAAGTGGTCCTGCAGGGTTT
CAATTCAAACCTCACCATGCTGGATGGCCGCGGTGAAGGTGCCGGTGCCGGCGGCGGTCTTCCGGACTATGGCAATGACA
GCCAGGGCGGCGGCGGAGGCGGCTTCGGTGGCGGCTCTGGTGGCAGCTTCGGCGGTGGCGGAAGCGGCGGCGGCTATGGC
AGCGGTTCCAGCGGTGGTGGTTATGGCGGTCCCTCCGGTGGCGGCGGCGGCCCGATGGATGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222F0E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.913

98.919

0.514
  ssb Glaesserella parasuis strain SC1401

47.179

100

0.497

Multiple sequence alignment