Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   C7M26_RS20580 Genome accession   NZ_CP028212
Coordinates   3929764..3930768 (+) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis strain SRCM102748     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 3924764..3935768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M26_RS20555 (C7M26_04049) murC 3925458..3926756 (+) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -
  C7M26_RS20560 (C7M26_04050) ytxG 3926918..3927340 (+) 423 WP_003229276.1 DUF948 domain-containing protein -
  C7M26_RS20565 (C7M26_04051) ytxH 3927371..3927826 (+) 456 WP_032722351.1 YtxH domain-containing protein -
  C7M26_RS20570 (C7M26_04052) ytxJ 3927850..3928176 (+) 327 WP_032722350.1 bacillithiol system redox-active protein YtxJ -
  C7M26_RS20575 (C7M26_04053) aroX 3928412..3929488 (+) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  C7M26_RS20580 (C7M26_04054) ccpA 3929764..3930768 (+) 1005 WP_003229285.1 catabolite control protein A Regulator
  C7M26_RS20585 (C7M26_04055) motP 3930831..3931649 (+) 819 WP_014477672.1 flagellar motor protein MotP -
  C7M26_RS20590 (C7M26_04056) motS 3931639..3932367 (+) 729 WP_003229290.1 flagellar motor protein MotS -
  C7M26_RS20595 (C7M26_04057) acuC 3932378..3933541 (-) 1164 WP_004398517.1 acetoin utilization protein AcuC -
  C7M26_RS20600 (C7M26_04058) acuB 3933538..3934182 (-) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  C7M26_RS20605 (C7M26_04059) acuA 3934209..3934841 (-) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=239972 C7M26_RS20580 WP_003229285.1 3929764..3930768(+) (ccpA) [Bacillus subtilis strain SRCM102748]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=239972 C7M26_RS20580 WP_003229285.1 3929764..3930768(+) (ccpA) [Bacillus subtilis strain SRCM102748]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGACTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGTAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCTGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCGCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503