Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CG419_RS06320 Genome accession   NZ_CP022474
Coordinates   1256029..1258143 (-) Length   704 a.a.
NCBI ID   WP_244185427.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain MRS6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251029..1263143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG419_RS06300 (CG419_06300) rpsO 1252687..1252956 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  CG419_RS06305 (CG419_06305) rpsT 1253233..1253487 (+) 255 WP_089556808.1 30S ribosomal protein S20 -
  CG419_RS06315 (CG419_06315) holA 1255000..1256028 (-) 1029 WP_089556809.1 DNA polymerase III subunit delta -
  CG419_RS06320 (CG419_06320) comEC 1256029..1258143 (-) 2115 WP_244185427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CG419_RS06325 (CG419_06325) - 1258284..1258772 (-) 489 WP_004270740.1 ComE operon protein 2 -
  CG419_RS06330 (CG419_06330) comEA 1258831..1259502 (-) 672 WP_089556811.1 helix-hairpin-helix domain-containing protein Machinery gene
  CG419_RS06335 (CG419_06335) - 1259580..1260626 (-) 1047 WP_089556812.1 SepM family pheromone-processing serine protease -
  CG419_RS06340 (CG419_06340) coaD 1260628..1261122 (-) 495 WP_089556813.1 pantetheine-phosphate adenylyltransferase -
  CG419_RS06345 (CG419_06345) rsmD 1261134..1261688 (-) 555 WP_089556814.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CG419_RS06350 (CG419_06350) - 1261694..1261984 (-) 291 WP_004270748.1 YlbG family protein -
  CG419_RS06355 (CG419_06355) - 1262004..1263092 (-) 1089 WP_089556815.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 79771.24 Da        Isoelectric Point: 9.1792

>NTDB_id=239803 CG419_RS06320 WP_244185427.1 1256029..1258143(-) (comEC) [Latilactobacillus curvatus strain MRS6]
MVSGLVLCLGGCRFWLARRAYEQPVRPNNQVYKIQPDTIKVAGDQIQLMAQGQNDDQRVVCYYRCQSSAEKRRWQTTNQP
LLLAGDIELERIQGATNRNEFDYARFMGQQKHCFYQANIIDGTHFKRIPPQGWLDQLHQCRQNGLIYLRQLPPALRFHAE
ALLCGVRESDGLAYQNVLGQLGIIHLLSLSGLHVFYFVTIIRRLATLCRVPREWVNISLFCLLPLYALFVGGGTSITRAI
GLILLRLICELSHFQQSRLDSWSWVLLVNLLWQPYLLISMGGLLSYLMAFGLIYQRRHGAFTTAFWLGLLSLPVCLRFNY
RWHILTILINGIVAPIFLPVMLGLIMVAICLWPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIG
TLWLMASTGRRAKWGWWAVISLYVISFIGIHFNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRQI
VSRAEKVTVNYLYSCGIDHLEAIALSHQDADHIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLADQ
HFMIGHQQINVLAPVVAGPGGNADSLVLQTQIGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIA
TWQVKGALISAGCHNRYGHPHAATLQTLKRANVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=239803 CG419_RS06320 WP_244185427.1 1256029..1258143(-) (comEC) [Latilactobacillus curvatus strain MRS6]
ATGGTCAGTGGACTGGTACTGTGTTTAGGCGGTTGCCGTTTTTGGCTAGCACGGCGCGCCTACGAACAGCCGGTTAGACC
AAATAATCAAGTATATAAGATTCAACCCGATACGATCAAAGTGGCTGGCGATCAGATTCAATTAATGGCGCAGGGGCAGA
ATGATGACCAACGTGTTGTTTGCTACTATCGCTGCCAGAGTTCAGCGGAAAAACGCCGTTGGCAAACGACGAATCAGCCG
TTATTATTAGCGGGTGATATTGAACTAGAGCGTATCCAAGGTGCTACTAACCGGAATGAGTTCGACTATGCGCGCTTTAT
GGGGCAGCAAAAGCATTGTTTTTATCAAGCAAATATAATTGACGGAACGCACTTTAAACGGATTCCTCCCCAAGGTTGGT
TAGATCAACTACACCAATGCCGCCAAAACGGATTGATTTATCTCCGACAATTGCCACCAGCGTTGCGTTTTCATGCAGAG
GCGTTGTTATGTGGTGTTCGAGAGTCAGATGGCCTGGCCTACCAGAATGTGTTAGGTCAATTGGGGATTATTCATTTATT
GAGTTTATCCGGATTGCATGTATTCTACTTTGTGACAATCATTCGTCGATTGGCAACGCTGTGTCGAGTCCCGCGTGAAT
GGGTGAATATTAGCTTGTTTTGTTTGCTACCCCTTTATGCGTTGTTTGTGGGGGGAGGCACGAGTATTACACGCGCTATC
GGGCTGATCTTACTACGATTAATCTGCGAATTAAGTCATTTTCAGCAATCGCGTTTAGATAGTTGGAGTTGGGTATTGCT
GGTCAATCTTTTATGGCAGCCGTATTTATTAATCAGTATGGGGGGATTGCTGAGCTATCTGATGGCTTTTGGGTTGATTT
ATCAGCGGCGCCATGGTGCTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTAT
CGCTGGCATATCTTGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGT
AGCGATTTGCTTATGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGTTGTATAAAGGATTAG
CTTGGATTGCAACGTTTCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGC
ACACTATGGTTGATGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGTGGGCTGTTATCAGCCTGTATGTCATTAGTTT
TATTGGTATCCACTTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGTTTGTTGATTCAACAAC
CCTTCAATCGACATAACCTGTTAATTGATACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATT
GTGAGTCGGGCGGAAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCA
TCAGGATGCTGATCATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCT
TACCGCAAAACCGGCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTGCGATTGAGCCTTATTTGGCGGACCAA
CATTTTATGATTGGTCACCAACAAATCAATGTGTTAGCGCCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGT
TTTGCAAACACAAATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATC
GCTACCCACAATTACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCG
ACGTGGCAGGTAAAAGGGGCGTTGATTTCTGCGGGATGCCATAATCGTTATGGTCATCCACATGCCGCAACGCTGCAGAC
TTTAAAACGTGCGAACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGC
CAATGATTAAAACAACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(444-651)

Competence protein (Competence)

(173-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.801

100

0.631

Multiple sequence alignment