Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C7M23_RS18145 Genome accession   NZ_CP028209
Coordinates   3544401..3546230 (-) Length   609 a.a.
NCBI ID   WP_201757451.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3539401..3551230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS18110 (C7M23_03568) yjbM 3539854..3540489 (-) 636 WP_003245294.1 GTP diphosphokinase -
  C7M23_RS18115 (C7M23_03569) - 3540518..3540886 (-) 369 WP_038427600.1 hypothetical protein -
  C7M23_RS18120 (C7M23_03570) yjbK 3541011..3541583 (+) 573 WP_014479452.1 CYTH domain-containing protein -
  C7M23_RS18125 (C7M23_03571) cwlQ 3541598..3542332 (+) 735 WP_250622474.1 bifunctional muramidase/murein lytic transglycosylase -
  C7M23_RS18130 (C7M23_03572) bhbI 3542588..3542986 (+) 399 WP_131227313.1 thiol management oxidoreductase -
  C7M23_RS18135 (C7M23_03573) spxH 3542983..3543882 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  C7M23_RS18140 (C7M23_03575) - 3544196..3544363 (+) 168 WP_003244944.1 hypothetical protein -
  C7M23_RS18145 (C7M23_03576) pepF 3544401..3546230 (-) 1830 WP_201757451.1 oligoendopeptidase F Regulator
  C7M23_RS18150 (C7M23_03577) coiA 3546460..3547581 (-) 1122 WP_003232938.1 competence protein CoiA Machinery gene
  C7M23_RS18155 - 3547655..3547777 (+) 123 WP_128473814.1 hypothetical protein -
  C7M23_RS18160 (C7M23_03578) mecA 3547772..3548428 (-) 657 WP_003232942.1 adaptor protein MecA Regulator
  C7M23_RS18165 - 3548395..3548535 (-) 141 WP_119122854.1 hypothetical protein -
  C7M23_RS18170 (C7M23_03579) yjbE 3548705..3549361 (+) 657 WP_003232944.1 TerC family protein -
  C7M23_RS18175 (C7M23_03580) spx 3549404..3549799 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  C7M23_RS18180 (C7M23_03581) yjbC 3549980..3550558 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70103.98 Da        Isoelectric Point: 5.1562

>NTDB_id=239805 C7M23_RS18145 WP_201757451.1 3544401..3546230(-) (pepF) [Bacillus subtilis strain SRCM102745]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMMKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=239805 C7M23_RS18145 WP_201757451.1 3544401..3546230(-) (pepF) [Bacillus subtilis strain SRCM102745]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
TACGTTTCCGTCCATTAAAGACGAAGATGGGAATGAGAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCTACGACG
CTTAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAATACAAGTCAGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGATGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATATGGCAATTACAGTATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATTCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GTTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476

Multiple sequence alignment