Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CG419_RS06330 Genome accession   NZ_CP022474
Coordinates   1258831..1259502 (-) Length   223 a.a.
NCBI ID   WP_089556811.1    Uniprot ID   A0AAC9UL63
Organism   Latilactobacillus curvatus strain MRS6     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1253831..1264502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG419_RS06315 (CG419_06315) holA 1255000..1256028 (-) 1029 WP_089556809.1 DNA polymerase III subunit delta -
  CG419_RS06320 (CG419_06320) comEC 1256029..1258143 (-) 2115 WP_244185427.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CG419_RS06325 (CG419_06325) - 1258284..1258772 (-) 489 WP_004270740.1 ComE operon protein 2 -
  CG419_RS06330 (CG419_06330) comEA 1258831..1259502 (-) 672 WP_089556811.1 helix-hairpin-helix domain-containing protein Machinery gene
  CG419_RS06335 (CG419_06335) - 1259580..1260626 (-) 1047 WP_089556812.1 SepM family pheromone-processing serine protease -
  CG419_RS06340 (CG419_06340) coaD 1260628..1261122 (-) 495 WP_089556813.1 pantetheine-phosphate adenylyltransferase -
  CG419_RS06345 (CG419_06345) rsmD 1261134..1261688 (-) 555 WP_089556814.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CG419_RS06350 (CG419_06350) - 1261694..1261984 (-) 291 WP_004270748.1 YlbG family protein -
  CG419_RS06355 (CG419_06355) - 1262004..1263092 (-) 1089 WP_089556815.1 CAP-associated domain-containing protein -
  CG419_RS06360 (CG419_06360) - 1263105..1264292 (-) 1188 WP_004270744.1 putative peptidoglycan glycosyltransferase FtsW -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24847.49 Da        Isoelectric Point: 9.9048

>NTDB_id=239805 CG419_RS06330 WP_089556811.1 1258831..1259502(-) (comEA) [Latilactobacillus curvatus strain MRS6]
MWRDYWQRYRRFWWVPCLVIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSTSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAAPDNQAGASPISTDA
KINLNQADATQLQTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=239805 CG419_RS06330 WP_089556811.1 1258831..1259502(-) (comEA) [Latilactobacillus curvatus strain MRS6]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCACCTCAAAAGGTGGGTTTGTCGATATCAAAGGTGCTGTGGCACATCCAGGA
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTCATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGCCTGACAATCAAGCGGGAGCCAGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTACAAACGCTAAATGGCATAGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-115)

Helix-hairpin-helix motif (HHH_3)

(160-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

64.103

100

0.673

Multiple sequence alignment