Detailed information NTG0239763

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BGM07_RS11865
• Genome accession: NZ_CP022473
• Coordinates: 610615..611484 (-)
• Length: 289 a.a.
• NCBI ID: WP_021450018.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MAVP-Q
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 605615..616484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BGM07_RS11830 (BGM07_011860)	rpsP	606626..606874 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
BGM07_RS11835 (BGM07_011865)	rimM	606903..607451 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
BGM07_RS11840 (BGM07_011870)	trmD	607479..608222 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BGM07_RS11845 (BGM07_011875)	rplS	608264..608617 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
BGM07_RS11850 (BGM07_011880)	yacG	608969..609163 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
BGM07_RS11855 (BGM07_011885)	zapD	609232..609972 (-)	741	WP_021450020.1	cell division protein ZapD	-
BGM07_RS11860 (BGM07_011890)	coaE	610000..610614 (-)	615	WP_021450019.1	dephospho-CoA kinase	-
BGM07_RS11865 (BGM07_011895)	pilD	610615..611484 (-)	870	WP_021450018.1	A24 family peptidase	Machinery gene
BGM07_RS11870 (BGM07_011900)	pilC	611549..612772 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
BGM07_RS11875 (BGM07_011905)	pilB	612796..614481 (-)	1686	WP_021450017.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BGM07_RS11880 (BGM07_011910)	-	614481..614945 (-)	465	WP_021450016.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
BGM07_RS11885 (BGM07_011915)	nadC	615209..616096 (-)	888	WP_021450015.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32409.53 Da
• Isoelectric Point: 7.1970

>NTDB_id=239763 BGM07_RS11865 WP_021450018.1 610615..611484(-) (pilD) [Vibrio parahaemolyticus strain MAVP-Q]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSMPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=239763 BGM07_RS11865 WP_021450018.1 610615..611484(-) (pilD) [Vibrio parahaemolyticus strain MAVP-Q]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCATGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446