Detailed information
Bioinformatically predicted
Overview
| Name | amiF | Type | Regulator |
| Locus tag | STR_RS06760 | Genome accession | NC_006449 |
| Coordinates | 1277705..1278634 (-) | Length | 309 a.a. |
| NCBI ID | WP_002951426.1 | Uniprot ID | A0A7U7CIU5 |
| Organism | Streptococcus thermophilus CNRZ1066 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1262171..1333943 | 1277705..1278634 | within | 0 |
Gene organization within MGE regions
Location: 1262171..1333943
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STR_RS06690 (str1422) | liaF | 1262179..1262877 (-) | 699 | WP_011227403.1 | cell wall-active antibiotics response protein LiaF | - |
| STR_RS11350 (str1423) | - | 1263143..1263298 (-) | 156 | WP_011226290.1 | ion channel | - |
| STR_RS06695 (str1425) | stkP/pknB | 1263935..1265806 (-) | 1872 | WP_011226292.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | Regulator |
| STR_RS06700 (str1426) | - | 1265806..1266543 (-) | 738 | WP_002946881.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| STR_RS06705 (str1427) | rsmB | 1266587..1267909 (-) | 1323 | WP_014608533.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| STR_RS06710 (str1428) | fmt | 1267899..1268834 (-) | 936 | WP_002951411.1 | methionyl-tRNA formyltransferase | - |
| STR_RS06715 (str1429) | - | 1268852..1271248 (-) | 2397 | WP_011227404.1 | primosomal protein N' | - |
| STR_RS06720 (str1430) | rpoZ | 1271390..1271704 (-) | 315 | WP_002951415.1 | DNA-directed RNA polymerase subunit omega | - |
| STR_RS06725 (str1431) | gmk | 1271726..1272355 (-) | 630 | WP_011226296.1 | guanylate kinase | - |
| STR_RS06730 (str1432) | ftsY | 1272588..1273979 (-) | 1392 | WP_011226297.1 | signal recognition particle-docking protein FtsY | - |
| STR_RS06735 (str1433) | - | 1273993..1274808 (-) | 816 | WP_011227405.1 | Cof-type HAD-IIB family hydrolase | - |
| STR_RS06740 (str1434) | - | 1274801..1275595 (-) | 795 | WP_011227406.1 | HAD hydrolase family protein | - |
| STR_RS06745 (str1435) | - | 1275778..1276155 (+) | 378 | WP_011226300.1 | GntR family transcriptional regulator | - |
| STR_RS06750 (str1436) | - | 1276160..1276858 (+) | 699 | WP_011226301.1 | ABC transporter ATP-binding protein | - |
| STR_RS06755 (str1437) | - | 1276870..1277655 (+) | 786 | WP_002951425.1 | hypothetical protein | - |
| STR_RS06760 (str1438) | amiF | 1277705..1278634 (-) | 930 | WP_002951426.1 | ATP-binding cassette domain-containing protein | Regulator |
| STR_RS06765 (str1439) | amiE | 1278627..1279712 (-) | 1086 | WP_011226304.1 | ABC transporter ATP-binding protein | Regulator |
| STR_RS06770 (str1440) | amiD | 1279722..1280648 (-) | 927 | WP_002946409.1 | oligopeptide ABC transporter permease OppC | Regulator |
| STR_RS06775 (str1441) | amiC | 1280648..1282141 (-) | 1494 | WP_011227407.1 | ABC transporter permease | Regulator |
| STR_RS06780 | - | 1282203..1284169 (-) | 1967 | Protein_1271 | peptide ABC transporter substrate-binding protein | - |
| STR_RS10185 (str1444) | - | 1284525..1285774 (+) | 1250 | Protein_1272 | ISL3 family transposase | - |
| STR_RS06790 (str1445) | amiA3 | 1285819..1287786 (-) | 1968 | WP_011227411.1 | peptide ABC transporter substrate-binding protein | Regulator |
| STR_RS10190 | - | 1287990..1288180 (-) | 191 | Protein_1274 | IS3 family transposase | - |
| STR_RS11355 | - | 1288222..1288584 (-) | 363 | Protein_1275 | ATP-binding cassette domain-containing protein | - |
| STR_RS06805 (str1449) | - | 1288616..1288930 (-) | 315 | Protein_1276 | TatD family hydrolase | - |
| STR_RS06810 (str1450) | - | 1289279..1290484 (+) | 1206 | WP_011227415.1 | L-lactate MFS transporter | - |
| STR_RS10195 | - | 1290530..1291882 (-) | 1353 | Protein_1278 | IS3 family transposase | - |
| STR_RS06825 (str1455) | pta | 1291968..1292951 (-) | 984 | WP_011227420.1 | phosphate acetyltransferase | - |
| STR_RS06830 (str1456) | - | 1292965..1293861 (-) | 897 | WP_011226316.1 | RluA family pseudouridine synthase | - |
| STR_RS06835 (str1457) | - | 1293858..1294694 (-) | 837 | WP_041827075.1 | NAD kinase | - |
| STR_RS06840 (str1459) | - | 1294666..1295340 (-) | 675 | WP_002951443.1 | GTP pyrophosphokinase | - |
| STR_RS06845 (str1458) | - | 1295436..1296011 (+) | 576 | WP_002951444.1 | CYTH domain-containing protein | - |
| STR_RS06850 (str1460) | - | 1296374..1297345 (+) | 972 | WP_002951446.1 | ribose-phosphate diphosphokinase | - |
| STR_RS06855 (str1461) | - | 1297349..1298461 (+) | 1113 | WP_002948029.1 | cysteine desulfurase family protein | - |
| STR_RS06860 (str1462) | - | 1298463..1298810 (+) | 348 | WP_002948028.1 | DUF1831 domain-containing protein | - |
| STR_RS06865 (str1463) | - | 1298954..1299613 (+) | 660 | WP_041827076.1 | redox-sensing transcriptional repressor Rex | - |
| STR_RS06870 (str1464) | - | 1299606..1300301 (+) | 696 | WP_011227423.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| STR_RS06875 (str1465) | radC | 1300354..1301040 (-) | 687 | WP_011227424.1 | RadC family protein | - |
| STR_RS06880 (str1466) | - | 1301219..1302559 (-) | 1341 | WP_231108743.1 | DUF2142 domain-containing protein | - |
| STR_RS06885 (str1467) | - | 1302708..1304453 (-) | 1746 | WP_011227426.1 | rhamnan synthesis F family protein | - |
| STR_RS06890 (str1468) | - | 1304455..1306155 (-) | 1701 | WP_041827077.1 | glycosyltransferase family 4 protein | - |
| STR_RS06895 (str1469) | - | 1306173..1307375 (-) | 1203 | WP_011227428.1 | ABC transporter ATP-binding protein | - |
| STR_RS06900 (str1470) | - | 1307375..1308181 (-) | 807 | WP_011227429.1 | ABC transporter permease | - |
| STR_RS06905 (str1471) | - | 1308181..1309122 (-) | 942 | WP_011227430.1 | glycosyltransferase family 2 protein | - |
| STR_RS06910 (str1472) | cps2T | 1309119..1310267 (-) | 1149 | WP_011227431.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| STR_RS06915 (str1474) | - | 1310386..1311168 (-) | 783 | WP_011227432.1 | glycosyltransferase family A protein | - |
| STR_RS06920 (str1475) | - | 1311169..1311501 (-) | 333 | WP_011227433.1 | DUF2304 domain-containing protein | - |
| STR_RS06925 (str1476) | - | 1311507..1312202 (-) | 696 | WP_173405413.1 | glycosyltransferase family 2 protein | - |
| STR_RS06930 | - | 1312286..1312758 (-) | 473 | Protein_1300 | glycosyltransferase family 2 protein | - |
| STR_RS06935 (str1479) | - | 1312823..1313809 (-) | 987 | WP_011227437.1 | glycosyltransferase family 2 protein | - |
| STR_RS06940 (str1480) | - | 1313806..1315065 (-) | 1260 | WP_011227438.1 | oligosaccharide flippase family protein | - |
| STR_RS06945 (str1483) | rfbD | 1315186..1316037 (-) | 852 | WP_014621820.1 | dTDP-4-dehydrorhamnose reductase | - |
| STR_RS06950 (str1485) | - | 1316155..1317081 (-) | 927 | WP_011227439.1 | glycosyltransferase family 2 protein | - |
| STR_RS06955 (str1487) | - | 1317091..1317426 (-) | 336 | WP_002891474.1 | metal-sulfur cluster assembly factor | - |
| STR_RS10545 (str1488) | rpoD | 1317480..1318589 (-) | 1110 | WP_011227440.1 | RNA polymerase sigma factor RpoD | - |
| STR_RS10550 (str1489) | dnaG | 1318593..1320404 (-) | 1812 | WP_011227441.1 | DNA primase | - |
| STR_RS06970 (str1490) | rpsU | 1320776..1320952 (-) | 177 | WP_011226340.1 | 30S ribosomal protein S21 | - |
| STR_RS06975 (str1491) | - | 1321333..1322286 (+) | 954 | WP_041826943.1 | IS30 family transposase | - |
| STR_RS06980 (str1492) | - | 1322392..1323186 (-) | 795 | WP_011227442.1 | ABC transporter substrate-binding protein | - |
| STR_RS06985 (str1493) | - | 1323279..1324388 (-) | 1110 | WP_041827078.1 | aminotransferase | - |
| STR_RS06990 (str1494) | - | 1324735..1325532 (-) | 798 | WP_011227444.1 | transporter substrate-binding domain-containing protein | - |
| STR_RS06995 (str1495) | - | 1325529..1326359 (-) | 831 | WP_041827079.1 | transporter substrate-binding domain-containing protein | - |
| STR_RS07000 (str1496) | - | 1326573..1327037 (-) | 465 | WP_011227446.1 | 8-oxo-dGTP diphosphatase | - |
| STR_RS07005 (str1497) | uvrB | 1327082..1329073 (-) | 1992 | WP_002953358.1 | excinuclease ABC subunit UvrB | - |
| STR_RS11360 | - | 1329220..1329465 (-) | 246 | WP_231779859.1 | hypothetical protein | - |
| STR_RS11685 | - | 1329760..1330696 (-) | 937 | Protein_1317 | CPBP family intramembrane glutamic endopeptidase | - |
| STR_RS07025 (str1501) | - | 1330895..1333105 (+) | 2211 | WP_011226350.1 | ABC transporter substrate-binding protein/permease | - |
| STR_RS07030 (str1502) | - | 1333105..1333845 (+) | 741 | WP_002945131.1 | amino acid ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 309 a.a. Molecular weight: 35171.28 Da Isoelectric Point: 6.5989
>NTDB_id=23974 STR_RS06760 WP_002951426.1 1277705..1278634(-) (amiF) [Streptococcus thermophilus CNRZ1066]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK
Nucleotide
Download Length: 930 bp
>NTDB_id=23974 STR_RS06760 WP_002951426.1 1277705..1278634(-) (amiF) [Streptococcus thermophilus CNRZ1066]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiF | Streptococcus thermophilus LMG 18311 |
100 |
100 |
1 |
| amiF | Streptococcus thermophilus LMD-9 |
99.676 |
100 |
0.997 |
| amiF | Streptococcus salivarius strain HSISS4 |
98.058 |
100 |
0.981 |