Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   TRNA_RS42220 Genome accession   NC_006270
Coordinates   4046891..4047577 (-) Length   228 a.a.
NCBI ID   WP_003177739.1    Uniprot ID   Q65D38
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4041891..4052577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS42205 (BL00208) - 4043089..4045029 (-) 1941 WP_003177730.1 FtsX-like permease family protein -
  TRNA_RS42210 (BL00209) - 4045019..4045780 (-) 762 WP_003177734.1 ABC transporter ATP-binding protein -
  TRNA_RS42215 (BL00210) - 4045881..4046885 (-) 1005 WP_003177737.1 sensor histidine kinase -
  TRNA_RS42220 (BL00211) braR 4046891..4047577 (-) 687 WP_003177739.1 response regulator transcription factor Regulator
  TRNA_RS42225 (BL00212) - 4047688..4049097 (-) 1410 WP_009329956.1 glycoside hydrolase family 1 protein -
  TRNA_RS42230 (BL00213) - 4049138..4050982 (-) 1845 WP_003177744.1 beta-glucoside-specific PTS transporter subunit IIABC -
  TRNA_RS42235 (BL00215) - 4051311..4051853 (-) 543 WP_009329959.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26716.64 Da        Isoelectric Point: 5.2020

>NTDB_id=23974 TRNA_RS42220 WP_003177739.1 4046891..4047577(-) (braR) [Bacillus licheniformis DSM 13 = ATCC 14580]
MFKLLLIEDDESLFQEIKERLTGWSYEVYGINDFSEVMQEFAAIKPDCVIIDIQLPKYDGFHWCRQIRSRSNVPILFLSS
RDHPADMVMSMQFGADDYIQKPFHFDVLIAKIQAIFRRVYDYNTEPEILKKTWCGATVDPEQNRVSNKAGAIELTRNEMF
ILKQLIDQKNKIVSREELMRSLWNDERFVSDNTLTVNVNRLRKKLDALNLGQYIETKVGQGYMAKEEG

Nucleotide


Download         Length: 687 bp        

>NTDB_id=23974 TRNA_RS42220 WP_003177739.1 4046891..4047577(-) (braR) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGTTTAAACTGCTGTTGATAGAAGATGATGAATCGCTGTTTCAAGAAATAAAAGAGCGGTTAACCGGGTGGTCATACGA
GGTATACGGCATCAACGATTTCAGCGAAGTGATGCAGGAGTTTGCGGCGATTAAGCCAGACTGCGTCATCATCGATATTC
AGCTGCCTAAATATGACGGGTTTCATTGGTGCCGGCAGATCCGCTCCCGTTCCAACGTTCCGATTCTCTTTTTATCTTCG
CGCGATCATCCTGCTGATATGGTCATGTCCATGCAGTTCGGAGCGGATGATTATATTCAGAAGCCGTTTCATTTTGACGT
GCTGATTGCCAAGATCCAGGCGATTTTCCGTCGCGTCTACGACTATAATACAGAGCCTGAGATTCTTAAAAAAACGTGGT
GCGGTGCAACCGTTGATCCCGAACAAAACCGCGTCAGCAATAAGGCGGGGGCGATCGAACTGACAAGGAATGAAATGTTC
ATTTTAAAACAATTGATCGACCAAAAAAACAAAATTGTCAGCAGGGAAGAATTGATGAGAAGCCTATGGAACGATGAACG
CTTTGTCAGCGATAACACGCTGACAGTCAACGTAAACCGCTTAAGAAAAAAACTCGATGCCTTGAACTTGGGGCAATATA
TCGAGACGAAGGTCGGCCAGGGCTATATGGCGAAAGAAGAAGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65D38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.724

96.93

0.395

Multiple sequence alignment