Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   TRNA_RS42515 Genome accession   NC_006270
Coordinates   4112750..4113457 (-) Length   235 a.a.
NCBI ID   WP_003177869.1    Uniprot ID   A0AA90EY57
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4107750..4118457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS42495 (BL00255) - 4107793..4108881 (-) 1089 WP_003177863.1 acyltransferase family protein -
  TRNA_RS42500 (BL00256) - 4109029..4110915 (-) 1887 WP_011198462.1 FtsX-like permease family protein -
  TRNA_RS42505 (BL00257) - 4110890..4111654 (-) 765 WP_003177865.1 ABC transporter ATP-binding protein -
  TRNA_RS42510 (BL00258) - 4111746..4112753 (-) 1008 WP_003177867.1 sensor histidine kinase -
  TRNA_RS42515 (BL00259) braR 4112750..4113457 (-) 708 WP_003177869.1 response regulator transcription factor Regulator
  TRNA_RS42520 (BL00189) - 4113640..4114011 (+) 372 WP_003177872.1 YxeA family protein -
  TRNA_RS42525 (BL00260) - 4114040..4115725 (-) 1686 WP_003177874.1 methyl-accepting chemotaxis protein -
  TRNA_RS42530 (BL00261) - 4115880..4117304 (-) 1425 WP_003177876.1 alanine/glycine:cation symporter family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27044.93 Da        Isoelectric Point: 4.9777

>NTDB_id=23975 TRNA_RS42515 WP_003177869.1 4112750..4113457(-) (braR) [Bacillus licheniformis DSM 13 = ATCC 14580]
MQKVMIVEDDPKIADLLKSHIVKYGYNVHVVKDFDRVMDEFRSTAPDLVLLDINLPSFDGYYWCRQIRQESICPVLFISA
RTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAYGEYAAKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEA
DIIESLMERHPRISGREDLLAKLWDDQAYVDENTLNVNITRVRKKFQELGIEDAVETVRGAGYRLNVSWVKAGEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=23975 TRNA_RS42515 WP_003177869.1 4112750..4113457(-) (braR) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGCAAAAAGTGATGATTGTAGAAGACGACCCGAAAATTGCAGATTTGTTAAAATCGCATATTGTCAAATACGGATACAA
CGTTCATGTAGTGAAAGACTTTGACCGTGTCATGGATGAGTTCAGAAGCACGGCGCCTGATCTTGTTCTGCTTGATATTA
ACCTGCCGAGCTTTGACGGCTACTACTGGTGCCGGCAAATCCGCCAGGAATCGATTTGCCCCGTCTTGTTTATTTCTGCG
CGGACAGGTGAAATGGATCAGGTGATGGCATTGGAAAACGGCGGAGATGACTTTATCACCAAGCCGTTTCACGCCGAGAT
CGTCATGGCAAAAATACGCAGCCAGCTTCGCAGGGCTTACGGCGAATACGCGGCGAAGGCGGAGGAACGGCTGCTGGAAA
AAGAAGGGCTGCGGCTGTATCCGGAAAGACTTGAACTGACATTTGCCGGTCAAACGGCTGCTTTGACGAAAAAAGAAGCG
GATATTATTGAAAGCTTAATGGAACGCCATCCGAGAATTTCAGGCCGCGAAGATTTGCTGGCCAAGCTGTGGGATGATCA
GGCATATGTGGATGAAAACACGCTTAATGTCAACATTACGCGCGTCAGAAAAAAATTTCAGGAGCTCGGTATTGAAGATG
CAGTGGAAACAGTGCGGGGCGCGGGCTATCGCTTGAATGTATCCTGGGTGAAGGCGGGAGAGGAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA90EY57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

39.91

94.894

0.379

Multiple sequence alignment