Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | CG015_RS12905 | Genome accession | NZ_CP022468 |
| Coordinates | 2785492..2786094 (-) | Length | 200 a.a. |
| NCBI ID | WP_017047271.1 | Uniprot ID | A0AAW8GXZ8 |
| Organism | Vibrio anguillarum strain MHK3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2780492..2791094
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CG015_RS12880 (CG015_12890) | aroB | 2780838..2781926 (-) | 1089 | WP_026027426.1 | 3-dehydroquinate synthase | - |
| CG015_RS12885 (CG015_12895) | aroK | 2781951..2782472 (-) | 522 | WP_010317691.1 | shikimate kinase AroK | - |
| CG015_RS12890 (CG015_12900) | pilQ | 2782659..2784374 (-) | 1716 | WP_013855889.1 | type IV pilus secretin PilQ | Machinery gene |
| CG015_RS12895 (CG015_12905) | pilP | 2784398..2784919 (-) | 522 | WP_013855888.1 | pilus assembly protein PilP | Machinery gene |
| CG015_RS12900 (CG015_12910) | pilO | 2784906..2785499 (-) | 594 | WP_013855887.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| CG015_RS12905 (CG015_12915) | pilN | 2785492..2786094 (-) | 603 | WP_017047271.1 | PilN domain-containing protein | Machinery gene |
| CG015_RS12910 (CG015_12920) | pilM | 2786084..2787094 (-) | 1011 | WP_094165236.1 | type IV pilus assembly protein PilM | Machinery gene |
| CG015_RS12915 (CG015_12925) | - | 2787244..2789742 (+) | 2499 | WP_129532792.1 | penicillin-binding protein 1A | - |
| CG015_RS12920 (CG015_12930) | oxyR | 2789779..2790669 (-) | 891 | WP_026027425.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 200 a.a. Molecular weight: 22717.24 Da Isoelectric Point: 9.6928
>NTDB_id=239735 CG015_RS12905 WP_017047271.1 2785492..2786094(-) (pilN) [Vibrio anguillarum strain MHK3]
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
MLHSINLLPWREEQRAAHKRRFMGLVVLGVMSAVGIQWGIGLYFSGQAQQQESRLAYLNQYIQQLDKQINALKMTEQEHK
ALLTRLSVVESLQSQRNKTTELMNLMPQLMPEGVYVDKIKMNGEEIEITGISDSTARLATMLDNFEKSALLSDVNMHSIV
HGNKRFGKEFQTFKVSFMFHSPTPQGSVLTKIRPTGAVHD
Nucleotide
Download Length: 603 bp
>NTDB_id=239735 CG015_RS12905 WP_017047271.1 2785492..2786094(-) (pilN) [Vibrio anguillarum strain MHK3]
ATGTTGCATAGTATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCAGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
ATGTTGCATAGTATTAACTTACTGCCTTGGCGAGAGGAACAAAGAGCGGCGCATAAGCGTCGTTTTATGGGCTTGGTCGT
CTTAGGTGTGATGAGCGCTGTTGGTATTCAATGGGGTATCGGTTTGTATTTCTCTGGGCAAGCACAGCAGCAAGAGTCTC
GTCTGGCCTATTTGAATCAATACATTCAGCAGCTTGATAAACAGATCAATGCATTAAAAATGACGGAACAAGAACACAAG
GCACTATTAACTCGCTTATCGGTTGTTGAGTCATTGCAAAGCCAACGCAATAAAACCACCGAGTTGATGAACCTGATGCC
ACAGCTTATGCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGGTGAAGAAATTGAAATTACGGGCATCAGTGACA
GCACTGCGCGTCTTGCGACCATGCTCGATAATTTTGAAAAATCAGCCTTACTTTCCGATGTCAACATGCACTCTATCGTG
CACGGTAATAAGCGATTTGGTAAGGAGTTTCAGACGTTTAAAGTGTCATTTATGTTTCATTCCCCGACACCACAGGGCTC
TGTGCTAACCAAGATTCGGCCTACAGGAGCTGTCCATGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
67.021 |
94 |
0.63 |
| pilN | Vibrio campbellii strain DS40M4 |
66.129 |
93 |
0.615 |