Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CG015_RS09245 Genome accession   NZ_CP022468
Coordinates   2027030..2029273 (-) Length   747 a.a.
NCBI ID   WP_129532591.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2022030..2034273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS09220 (CG015_09230) - 2022765..2023283 (+) 519 WP_129532589.1 cytochrome b -
  CG015_RS09225 (CG015_09235) kdsB 2023326..2024078 (-) 753 WP_017045182.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CG015_RS09230 (CG015_09240) - 2024078..2024257 (-) 180 WP_013856535.1 Trm112 family protein -
  CG015_RS09235 (CG015_09245) lpxK 2024238..2025245 (-) 1008 WP_129532590.1 tetraacyldisaccharide 4'-kinase -
  CG015_RS09240 (CG015_09250) msbA 2025249..2026997 (-) 1749 WP_019282056.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CG015_RS09245 (CG015_09255) comEC 2027030..2029273 (-) 2244 WP_129532591.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CG015_RS09250 (CG015_09260) - 2029280..2029789 (+) 510 WP_017042300.1 DUF2062 domain-containing protein -
  CG015_RS09255 (CG015_09265) lolE 2029928..2031172 (-) 1245 WP_094499885.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  CG015_RS09260 (CG015_09270) lolD 2031173..2031859 (-) 687 WP_094164821.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  CG015_RS09265 (CG015_09275) lolC 2031852..2033060 (-) 1209 WP_129532592.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  CG015_RS09270 (CG015_09280) - 2033226..2033795 (+) 570 WP_017048079.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83519.41 Da        Isoelectric Point: 9.3374

>NTDB_id=239729 CG015_RS09245 WP_129532591.1 2027030..2029273(-) (comEC) [Vibrio anguillarum strain MHK3]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWIMPLFAILILSVVYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTNRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALFCTVLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSALLLFVFSPLISRFALAVYSLIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIQIFDQNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALISKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISIIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=239729 CG015_RS09245 WP_129532591.1 2027030..2029273(-) (comEC) [Vibrio anguillarum strain MHK3]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGATTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGTTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATTGCTCCTTTACCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCACA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCACTGATCATGTGTT
TGCTTAATGTGGCGATGATTGTCCTCAATGTCCGTATCAATACGTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTAATCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CCGCTTATTTTTTCGGTGGGGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTTGCTTTATTTTGTACGGTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTGCTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTAGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGTGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGTGTGATTCAAATCTTTGACCAAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCTATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTAGTAAGGTGAACCCTGAAGTCGCTATTGCCTCGCTCGCTAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCATTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-681)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)

Competence protein (Competence)

(208-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

51.872

100

0.519
  comEC Vibrio parahaemolyticus RIMD 2210633

44.063

100

0.447
  comEC Vibrio campbellii strain DS40M4

43.593

100

0.442

Multiple sequence alignment