Detailed information NTG0023940

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: TRNA_RS35850
• Genome accession: NC_006270
• Coordinates: 2791303..2791908 (-)
• Length: 201 a.a.
• NCBI ID: WP_003183986.1
• Uniprot ID: Q65GP5
• Organism: Bacillus licheniformis DSM 13 = ATCC 14580
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2786303..2796908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TRNA_RS35820 (BL01134)	-	2786963..2787346 (+)	384	WP_003183976.1	TIGR04086 family membrane protein	-
TRNA_RS35825 (BL01139)	yajC	2787543..2787806 (-)	264	WP_085959518.1	preprotein translocase subunit YajC	-
TRNA_RS35830 (BL01140)	tgt	2787853..2788998 (-)	1146	WP_011198160.1	tRNA guanosine(34) transglycosylase Tgt	-
TRNA_RS35835 (BL01141)	queA	2789027..2790055 (-)	1029	WP_003183982.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
TRNA_RS35840 (BL01142)	-	2790096..2790296 (-)	201	WP_003183984.1	DUF2905 domain-containing protein	-
TRNA_RS35845 (BL01143)	ruvB	2790289..2791293 (-)	1005	WP_003183985.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
TRNA_RS35850 (BL01144)	ruvA	2791303..2791908 (-)	606	WP_003183986.1	Holliday junction branch migration protein RuvA	Machinery gene
TRNA_RS35855 (BL01145)	-	2792031..2792552 (-)	522	WP_003183987.1	intercompartmental signaling factor BofC	-
TRNA_RS35860 (BL01135)	-	2792795..2793445 (+)	651	WP_003183988.1	protein kinase family protein	-
TRNA_RS35865 (BL01146)	-	2793723..2793902 (-)	180	WP_003183990.1	small acid-soluble spore protein H	-
TRNA_RS35870 (BL01147)	-	2793998..2794462 (-)	465	WP_003183991.1	DinB family protein	-
TRNA_RS35875 (BL00586)	-	2794523..2795233 (-)	711	WP_003183992.1	poly-gamma-glutamate hydrolase family protein	-
TRNA_RS35880 (BL05291)	-	2795647..2795826 (+)	180	WP_003183993.1	hypothetical protein	-
TRNA_RS35885 (BL01149)	-	2795918..2796244 (-)	327	WP_003183994.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22508.86 Da
• Isoelectric Point: 5.7383

>NTDB_id=23940 TRNA_RS35850 WP_003183986.1 2791303..2791908(-) (ruvA) [Bacillus licheniformis DSM 13 = ATCC 14580]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKKNSKETIYTYHYVREDTNALYGFSTREEKMLFTKMLNVTGIGP
KGALAILASGDPGAVIEAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADAVPEIAADLFNHEEREQIHEAATALEEAL
EALRALGYSDREIKKVQPHLKKEEALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=23940 TRNA_RS35850 WP_003183986.1 2791303..2791908(-) (ruvA) [Bacillus licheniformis DSM 13 = ATCC 14580]
TTGATCGAATTCGTAAAAGGGACGATTGATTATGTATCGCCCCAATATATTGTCATTGAAAACGGCGGGATCGGCTATCA
GATCTTCACGCCAAATCCGTTTATTTATAAGAAAAACAGCAAAGAAACAATCTATACATACCATTATGTAAGAGAAGACA
CGAATGCGCTGTACGGCTTTTCGACAAGGGAAGAAAAAATGCTGTTTACGAAAATGCTGAATGTTACGGGGATCGGCCCA
AAAGGAGCGCTTGCGATCCTCGCTTCCGGCGATCCGGGAGCGGTGATTGAAGCGATCGAGAATGAGGACGAAGCATTTCT
CGTCAAATTTCCCGGCGTAGGCAAAAAAACGGCAAGGCAGATCATCCTTGACCTGAAAGGGAAGCTTGCGGATGCCGTTC
CTGAAATCGCTGCCGATCTGTTTAACCATGAAGAGCGGGAGCAAATTCATGAAGCGGCAACGGCTCTTGAGGAAGCGCTT
GAAGCATTGAGGGCGCTCGGCTATTCCGATCGGGAAATTAAAAAAGTCCAGCCTCATTTGAAAAAGGAAGAGGCGCTTTC
GACAGATCAATACGTTAAAAAAGCATTGCAAAAATTGTTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: Q65GP5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	83.582	100	0.836
ruvA	Streptococcus pneumoniae R6	40.291	100	0.413
ruvA	Streptococcus pneumoniae D39	40.291	100	0.413
ruvA	Streptococcus pneumoniae TIGR4	40.291	100	0.413