Detailed information NTG0239231

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: CCX46_RS22225
• Genome accession: NZ_CP022411
• Coordinates: 4881362..4883596 (-)
• Length: 744 a.a.
• NCBI ID: WP_127929346.1
• Uniprot ID: -
• Organism: Pseudomonas sp. RU47
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4876362..4888596

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX46_RS22190 (CCX46_21755)	murB	4876743..4877762 (-)	1020	WP_127929341.1	UDP-N-acetylmuramate dehydrogenase	-
CCX46_RS22195 (CCX46_21760)	-	4877759..4878223 (-)	465	WP_127929342.1	low molecular weight protein-tyrosine-phosphatase	-
CCX46_RS22200 (CCX46_21765)	kdsB	4878223..4878987 (-)	765	WP_127929343.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CCX46_RS22205 (CCX46_21770)	-	4878984..4879169 (-)	186	WP_003174668.1	Trm112 family protein	-
CCX46_RS22210 (CCX46_21775)	lpxK	4879191..4880201 (-)	1011	WP_127929344.1	tetraacyldisaccharide 4'-kinase	-
CCX46_RS22215 (CCX46_21780)	-	4880201..4880629 (-)	429	WP_127929345.1	biopolymer transporter ExbD	-
CCX46_RS22220 (CCX46_21785)	exbB	4880626..4881261 (-)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
CCX46_RS22225 (CCX46_21790)	comA	4881362..4883596 (-)	2235	WP_127929346.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
CCX46_RS22230 (CCX46_21795)	-	4883733..4884251 (+)	519	WP_007908202.1	DUF2062 domain-containing protein	-
CCX46_RS22235 (CCX46_21800)	-	4884395..4885174 (-)	780	WP_008087860.1	ABC transporter permease	-
CCX46_RS22240 (CCX46_21805)	-	4885171..4886103 (-)	933	WP_127929347.1	ABC transporter ATP-binding protein	-
CCX46_RS22245 (CCX46_21810)	-	4886227..4886850 (-)	624	WP_127929348.1	glutathione S-transferase	-
CCX46_RS22250 (CCX46_21815)	-	4886894..4887553 (-)	660	WP_127929349.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81704.98 Da
• Isoelectric Point: 10.0481

>NTDB_id=239231 CCX46_RS22225 WP_127929346.1 4881362..4883596(-) (comA) [Pseudomonas sp. RU47]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVTALMLLPFRSYPLAIFLLGFTWASVGAQWALNDRLPAELDGETRWLEG
RVVGLPQNGDGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLSEARWAWRDSIRQRLLAVDAHGRAGVLAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYWL
VAGLARFGLWPLRWPWLPWACGLAFTAALGYALLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTMLLPIPCVGEGLLWLAGGLIDGLFRALAIMAGHWPAWIAPSIPAWFLAAGGLGAVLLVLPRGVPMRPLGWPLLLLLV
VPPRERLDEGLAEIWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALRKLRVEKLDLMLLSHADADHAGGA
LAITRGLTVDRVISGDPPGLPEALSAEACESGRQWQWDGVAFQLWQWADARDSNQRSCVLQIEANGERLLLTGDIDTHAE
RALLDSPLAVPTPWLQSPHHGSRSSSSMALLKVLQPAAVLISRGQGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIQVQL
GTFAPPRTMRHQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=239231 CCX46_RS22225 WP_127929346.1 4881362..4883596(-) (comA) [Pseudomonas sp. RU47]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTGACGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCGATTTTTCTGCTGGGTTTCACCT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGCTTGCCGGCCGAACTGGATGGCGAAACCCGCTGGCTCGAAGGG
CGGGTGGTCGGGTTGCCGCAGAACGGCGACGGTGTGGTGCGTTTCGAGTTGGCTGATGCACGCTCACGTCACGAAAAACT
GCCATCGCTGATGCGACTCGCGTGGTACGCCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGCTTGGCGGTCAAGCTCA
AGCGTCCCGGTGGTTTGCTCAACCCGGACGCTTTCGATTACGAGGCTTGGCTGCTGGCGCAACGCATCGGTGCGACCGGC
ACGGTCAAGGATGGTCAACGCCTGAGCGAAGCGCGTTGGGCCTGGCGCGACAGCATTCGTCAGCGCCTGCTTGCAGTGGA
TGCGCACGGTCGGGCCGGTGTTCTGGCCGCATTGGTGTTGGGTGATGGGTCCGGGCTCAGTCGCGAGGATTGGCAGATCC
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGTCAGCATATCGGCTTGCTGGCGGCGGTGATGTATTGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCGCTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTTACGGC
GGCGCTGGGTTACGCCTTGCTTGCCGGATTTGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGCCTGGTACTGTTGT
GGCGTTTGCGCTTTCGCCATCTGGGGGCATGGTGGCCGCTGCTGCTGGCGTTCAATGGTGTGCTGTTGCTGGATCCGCTC
GCGAGTTTGCGTCCGGGTTTGTGGTTGTCGTTTGCGGCGGTGGCGGTGTTGATTTTCACCTTTGGCGGCCGCCTGGGCGC
GTGGCGCTGGTGGCAGACCTGGACACGGGCGCAATGGTTGATTGCGATCGGTTTGTGCCCGGTGTTGCTGGCATTGAACC
TGCCGATCAGTCTCAGCGGGCCACTGGCCAACCTGCTTGCAGTGCCTTGGGTCAGTCTTGTCGTGCTGCCGCCGGCGTTG
CTCGGGACGATGTTGTTGCCCATACCCTGTGTCGGCGAAGGGCTGCTGTGGCTGGCCGGTGGTTTGATCGACGGGTTGTT
TCGCGCGCTGGCGATAATGGCCGGGCATTGGCCTGCATGGATCGCACCCTCGATACCCGCCTGGTTCTTGGCTGCTGGCG
GTCTCGGCGCGGTGTTGTTGGTGTTGCCGCGCGGCGTGCCAATGCGCCCGCTGGGCTGGCCATTGCTGTTGCTGCTGGTG
GTGCCGCCACGCGAACGGCTGGATGAGGGATTGGCCGAGATCTGGCAACTGGATGTCGGCCAAGGCCTGGCCATCCTGAT
CCGCACCCGCCATCACACGTTGCTCTATGACGCTGGGCCGCGCTTTGGTGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCGCGTTGCGCAAACTGAGAGTGGAAAAACTCGATCTGATGCTGCTCAGCCATGCGGATGCCGATCACGCGGGTGGCGCT
CTGGCGATCACCCGTGGTTTGACCGTCGATCGCGTGATCAGCGGTGACCCGCCGGGACTGCCTGAGGCGTTGAGCGCCGA
AGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGGGTCGCTTTTCAACTCTGGCAATGGGCGGACGCCCGCGACAGCA
ATCAGCGCTCCTGCGTCTTGCAGATCGAGGCCAATGGCGAGCGTCTGTTGCTGACCGGCGATATCGACACCCACGCCGAA
CGTGCGCTGCTCGACAGTCCATTGGCCGTGCCGACACCATGGCTGCAATCGCCCCATCACGGCAGCCGCAGTTCGTCGTC
AATGGCGCTGCTCAAGGTGTTGCAACCCGCAGCCGTGCTGATTTCCCGTGGGCAGGGCAATTCCTTCGGCCATCCGCACC
CGACCGTGCTGGCGCGTTATCGCAAACAGGGACTGCGCATTTACGACAGCGCCGAGCAGGGTGCCATTCAGGTGCAACTG
GGCACCTTCGCGCCGCCTCGCACAATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCGCTGGCCCGCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.592	96.237	0.593
comA	Ralstonia pseudosolanacearum GMI1000	33.373	100	0.378