Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   C9J86_RS00360 Genome accession   NZ_CP028190
Coordinates   45301..46011 (+) Length   236 a.a.
NCBI ID   WP_000094091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN018749     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 40301..51011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J86_RS00300 (C9J86_00300) - 40566..41204 (-) 639 WP_001043063.1 ERF family protein -
  C9J86_RS00305 (C9J86_00305) - 41204..41683 (-) 480 WP_000002517.1 siphovirus Gp157 family protein -
  C9J86_RS00310 (C9J86_00310) - 41698..41958 (-) 261 WP_000291093.1 DUF1108 family protein -
  C9J86_RS00315 (C9J86_00315) - 42052..42372 (-) 321 WP_000219664.1 hypothetical protein -
  C9J86_RS00320 (C9J86_00320) - 42373..42540 (-) 168 WP_000048122.1 DUF1270 domain-containing protein -
  C9J86_RS00325 (C9J86_00325) - 42533..42754 (-) 222 WP_000594788.1 hypothetical protein -
  C9J86_RS00330 (C9J86_00330) - 42826..43056 (+) 231 WP_000395456.1 hypothetical protein -
  C9J86_RS00335 (C9J86_00335) - 43223..44020 (-) 798 WP_015980402.1 phage antirepressor Ant -
  C9J86_RS00340 (C9J86_00340) - 44077..44286 (+) 210 WP_000772137.1 hypothetical protein -
  C9J86_RS00345 (C9J86_00345) - 44279..44419 (-) 141 WP_000939495.1 hypothetical protein -
  C9J86_RS00350 (C9J86_00350) - 44434..44877 (-) 444 WP_000435360.1 hypothetical protein -
  C9J86_RS00355 (C9J86_00355) - 44890..45129 (-) 240 WP_000548576.1 helix-turn-helix transcriptional regulator -
  C9J86_RS00360 (C9J86_00360) irvR 45301..46011 (+) 711 WP_000094091.1 helix-turn-helix domain-containing protein Regulator
  C9J86_RS15100 - 46023..46169 (+) 147 WP_001049401.1 hypothetical protein -
  C9J86_RS00365 (C9J86_00365) - 46166..46351 (+) 186 WP_000100503.1 hypothetical protein -
  C9J86_RS00370 (C9J86_00370) - 46441..46836 (+) 396 WP_001558060.1 hypothetical protein -
  C9J86_RS00375 (C9J86_00375) - 46925..47071 (+) 147 WP_001013104.1 hypothetical protein -
  C9J86_RS00380 (C9J86_00380) - 47068..47682 (-) 615 WP_015980400.1 hypothetical protein -
  C9J86_RS00385 (C9J86_00385) - 47795..48840 (+) 1046 Protein_76 tyrosine-type recombinase/integrase -
  C9J86_RS00390 (C9J86_00390) yfkAB 48885..50030 (+) 1146 WP_053865706.1 radical SAM/CxCxxxxC motif protein YfkAB -
  C9J86_RS00395 (C9J86_00395) - 50290..50820 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26884.44 Da        Isoelectric Point: 5.1973

>NTDB_id=239212 C9J86_RS00360 WP_000094091.1 45301..46011(+) (irvR) [Staphylococcus aureus strain CFSAN018749]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVN
GDSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=239212 C9J86_RS00360 WP_000094091.1 45301..46011(+) (irvR) [Staphylococcus aureus strain CFSAN018749]
ATGAGTTCATTTTCTTCGAATCTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTAAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAACG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTGTCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATGA
TAATCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTG
AAAGATTATATAACGAACCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAAT
GGAGACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAAT
AGGCGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAA
ATAAAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGATTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(124-235)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.373

Multiple sequence alignment