Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CGC32_RS05620 Genome accession   NZ_CP022409
Coordinates   1141441..1141845 (-) Length   134 a.a.
NCBI ID   WP_089482813.1    Uniprot ID   -
Organism   Helicobacter pylori strain G272     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1136441..1146845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGC32_RS05570 (CGC32_05575) - 1136611..1137707 (-) 1097 Protein_1058 hypothetical protein -
  CGC32_RS05575 (CGC32_05580) - 1137697..1138477 (-) 781 Protein_1059 hypothetical protein -
  CGC32_RS05580 (CGC32_05585) - 1138477..1138858 (-) 382 Protein_1060 DUF1294 domain-containing protein -
  CGC32_RS05585 (CGC32_05590) - 1138986..1139132 (-) 147 WP_232462321.1 hypothetical protein -
  CGC32_RS05595 (CGC32_05600) - 1139190..1139351 (-) 162 WP_014536434.1 lysozyme -
  CGC32_RS05600 (CGC32_05605) - 1139371..1139745 (-) 375 WP_232462296.1 lysozyme -
  CGC32_RS05605 (CGC32_05610) - 1139884..1140444 (-) 561 WP_089482811.1 hypothetical protein -
  CGC32_RS05610 (CGC32_05615) - 1140428..1140766 (-) 339 WP_089482812.1 hypothetical protein -
  CGC32_RS05615 (CGC32_05620) - 1140950..1141210 (-) 261 WP_089483116.1 tetratricopeptide repeat protein -
  CGC32_RS05620 (CGC32_05625) dprB 1141441..1141845 (-) 405 WP_089482813.1 Holliday junction resolvase RuvX Machinery gene
  CGC32_RS05625 (CGC32_05630) dprA 1141842..1142642 (-) 801 WP_089482814.1 DNA-processing protein DprA Machinery gene
  CGC32_RS05630 (CGC32_05635) minE 1142654..1142887 (-) 234 WP_000051424.1 cell division topological specificity factor MinE -
  CGC32_RS05635 (CGC32_05640) minD 1142884..1143690 (-) 807 WP_089482815.1 septum site-determining protein MinD -
  CGC32_RS05640 (CGC32_05645) ilvC 1143715..1144707 (-) 993 WP_089483117.1 ketol-acid reductoisomerase -
  CGC32_RS05650 (CGC32_05655) - 1144956..1145738 (+) 783 WP_089482816.1 NAD+ synthase -
  CGC32_RS05655 (CGC32_05660) - 1145735..1146673 (+) 939 WP_089482817.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15239.75 Da        Isoelectric Point: 9.1273

>NTDB_id=239211 CGC32_RS05620 WP_089482813.1 1141441..1141845(-) (dprB) [Helicobacter pylori strain G272]
MILACDVGLKRIGIAVLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=239211 CGC32_RS05620 WP_089482813.1 1141441..1141845(-) (dprB) [Helicobacter pylori strain G272]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATTGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTGCGCCAAAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGTATTGAATATTTCATCAAGCTTTTAGATTTTAAGGGTGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.284

100

0.933

Multiple sequence alignment